University of St Andrews School of Biology Senior Honours Project
Python code for generating various metrics and plot can be see above.
'Network_Generator.py' creates simulated data
'get_surface.py' reads static and dynamic banjo output files and calculates rho for each search, and plots search statistics
'3d.py' generates the search space topology diagram seen in the report
'settings_generator.py' reads a banjo settings templates and generates banjo settings for all files in its directory
'dynamicsettingsgenerator.py' does the same but includes all observations files in its directory in a settings file
'q3_discretiser.py' discretises data into q3 states then calculates the metric d for the dataset
'Milns_discretiser.py' discretises data into Milns states
'silence_data.py' obtains data for half network subgraphs from a data file for a bipartite graph
'data_processor.py' analyses RIS data and extracts the desired location and species data.