CS CM 122 (Spring 2019)
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Project 1: Sequence Alignment (10 kilobase) - Sliding Window Algorithm
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Project 2A: Sequence Alignment (1 million base) - Pigeonhole Phone-Book Algorithm
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Project 2B: Sequence Alignment (100 million base) - Burrows Wheeler Transformation
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Project 3: De Novo Sequence Assembly (10 kilobase) - De Bruijn Graph
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Project 4: RNA Sequencing - Isoform Quantification (5 genes) - Least Squares
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Project 5: RNA Sequencing - Isoform Quantification (455 genes) - Least Squares