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Fix and streamline random walk example to use for demos #68

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merged 4 commits into from
Nov 20, 2023
Merged

Fix and streamline random walk example to use for demos #68

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59f49ea
Fix conditions for compute msd
cbkerr Nov 20, 2023
4641195
Update init settings
cbkerr Nov 20, 2023
87a6335
Use correct flag for verbose option
cbkerr Nov 20, 2023
0699c8c
Merge branch 'main' into fix/random-walk
cbkerr Nov 20, 2023
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4 changes: 2 additions & 2 deletions projects/flow.2D-random-walk/src/init.py
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Expand Up @@ -14,9 +14,9 @@
logger.setLevel(logging.ERROR)

# The standard deviations to use for generating random walk moves
STANDARD_DEVIATIONS = np.linspace(start=0.1, stop=1, num=20)
STANDARD_DEVIATIONS = np.linspace(start=0.1, stop=1, num=5)
NUMBER_REPLICAS = 100
RUN_STEPS = 5_000
RUN_STEPS = 10_000
MAX_SEED = 2**32 - 1


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3 changes: 2 additions & 1 deletion projects/flow.2D-random-walk/src/project.py
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Expand Up @@ -125,7 +125,8 @@ def plot_mean_squared_displacement(job):

@agg_analyze_and_plot
@RandomWalkProject.pre(all_simulated)
@RandomWalkProject.post.true("msd_analyzed")
@RandomWalkProject.pre(lambda *jobs: "squared_displacement" in jobs[0].data)
@RandomWalkProject.post(lambda *jobs: jobs[0].doc.get("msd_analyzed"))
@RandomWalkProject.operation(aggregator=std_aggregator)
def compute_mean_squared_displacement(*jobs):
"""Compute and store the mean squared displacement for all std."""
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2 changes: 1 addition & 1 deletion projects/run-tests.sh
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Expand Up @@ -18,7 +18,7 @@ for PROJECT in `ls -d */`; do
cat ${REQUIREMENTS_FILE}
mamba install --yes --file ${REQUIREMENTS_FILE} --quiet
fi
python flow-test.py ${PROJECT} -vv --timeout=600 $@
python flow-test.py ${PROJECT} -v --timeout=600 $@
if [[ "$CI" ]]; then
echo "::endgroup::"
fi
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