fix linting

ggabernet · Sep 27, 2024 · 0410808 · 0410808
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -23,7 +23,6 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 
 ### `Deprecated parameters`
 
-
 ## [4.1.0] - Avenseguim
 
 ### `Added`

diff --git a/docs/usage.md b/docs/usage.md
@@ -512,7 +512,6 @@ nextflow run nf-core/airrfow \
 - If UMI's are present, the read containing them must be specified using the `--umi_read` parameter.
 - The `--read_format` parameter can be used to specify the Cell Barcode and UMI position within the reads (see TRUST4 [docs](https://github.com/liulab-dfci/TRUST4?tab=readme-ov-file#10x-genomics-data-and-barcode-based-single-cell-data)). For scRNAseq with 10X Genomics the R1 read usually contains both the cell barcode (barcode) and UMI. So we specify "R1" for both `--umi_read` and `--barcode_read`, and the positions of both the cell barcode and UMI with the `--read_format` parameter as in the example ("bc:0:15,um:16:27"). Then specify the R1 read in the filename_R1 column of the samplesheet, and the read containing the actual sequence (usually R2) in the filename_R2 column of the samplesheet.
 
-
 ## Core Nextflow arguments
 
 :::note
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Expand Up		@@ -23,7 +23,6 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.

		### `Deprecated parameters`


		## [4.1.0] - Avenseguim

		### `Added`
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@@ Expand Up / @@ -512,7 +512,6 @@ nextflow run nf-core/airrfow \ @@
     - If UMI's are present, the read containing them must be specified using the `--umi_read` parameter.
     - The `--read_format` parameter can be used to specify the Cell Barcode and UMI position within the reads (see TRUST4 [docs](https://github.com/liulab-dfci/TRUST4?tab=readme-ov-file#10x-genomics-data-and-barcode-based-single-cell-data)). For scRNAseq with 10X Genomics the R1 read usually contains both the cell barcode (barcode) and UMI. So we specify "R1" for both `--umi_read` and `--barcode_read`, and the positions of both the cell barcode and UMI with the `--read_format` parameter as in the example ("bc:0:15,um:16:27"). Then specify the R1 read in the filename_R1 column of the samplesheet, and the read containing the actual sequence (usually R2) in the filename_R2 column of the samplesheet.
     ## Core Nextflow arguments
     :::note
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