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@ga4gh

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

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  1. ga4gh-schemas ga4gh-schemas Public archive

    Models and APIs for Genomic data. RETIRED 2018-01-24

    Python 215 111

  2. benchmarking-tools benchmarking-tools Public

    Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

    HTML 192 46

  3. ga4gh-server ga4gh-server Public archive

    Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

    Python 96 91

  4. task-execution-schemas task-execution-schemas Public

    82 29

  5. workflow-execution-service-schemas workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    82 38

  6. vrs vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 82 34

Repositories

Showing 10 of 125 repositories
  • vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    ga4gh/vrs’s past year of commit activity
    Jupyter Notebook 82 Apache-2.0 34 22 (1 issue needs help) 3 Updated Dec 13, 2024
  • cat-vrs Public

    A terminology and data model for describing categorical variation concepts.

    ga4gh/cat-vrs’s past year of commit activity
    Makefile 3 Apache-2.0 2 7 (2 issues need help) 0 Updated Dec 12, 2024
  • refget Public

    GA4GH Refget specifications docs

    ga4gh/refget’s past year of commit activity
    HTML 14 7 18 0 Updated Dec 11, 2024
  • vrs-python Public

    GA4GH Variation Representation Python Implementation

    ga4gh/vrs-python’s past year of commit activity
    Python 52 Apache-2.0 27 38 (1 issue needs help) 3 Updated Dec 9, 2024
  • ga4gh-testbed-api Public

    GA4GH-wide testbed infrastructure for hosting testbed reports

    ga4gh/ga4gh-testbed-api’s past year of commit activity
    Java 1 1 8 1 Updated Dec 9, 2024
  • TASC Public

    TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.

    ga4gh/TASC’s past year of commit activity
    9 7 16 2 Updated Dec 5, 2024
  • va-spec-python Public

    GA4GH Variation Annotation Python Implementation

    ga4gh/va-spec-python’s past year of commit activity
    Python 0 Apache-2.0 1 2 0 Updated Dec 5, 2024
  • va-spec Public

    An information model for representing variant annotations.

    ga4gh/va-spec’s past year of commit activity
    Jupyter Notebook 18 Apache-2.0 4 105 (2 issues need help) 1 Updated Dec 5, 2024
  • cat-vrs-python Public

    GA4GH Categorical Variation Representation Python Implementation

    ga4gh/cat-vrs-python’s past year of commit activity
    Python 1 Apache-2.0 3 2 0 Updated Dec 4, 2024
  • fasp-scripts Public
    ga4gh/fasp-scripts’s past year of commit activity
    Jupyter Notebook 11 Apache-2.0 7 9 0 Updated Dec 3, 2024
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