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Get the mode inference pipeline to work with the new architecture #509

Merged
merged 39 commits into from
Feb 22, 2018
Merged

Get the mode inference pipeline to work with the new architecture #509

merged 39 commits into from
Feb 22, 2018

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shankari
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Thanks to @jensteff for most of the actual porting
Design decisions tracked at https://github.com/e-mission/e-mission-server/issues/508

jensteff and others added 13 commits June 26, 2017 19:43
@jensteff
Code in progress for unit testing
9f65b34
@jensteff
Code for adding predicition object and the start to the model stage o…
51127fc 
…f the pipeline
@jensteff
Removed print statements
a7e1da0
@jensteff
updates on the porting work. In progress
e300d8c
@jensteff
Added more timeseries integration, need to modify the section queries
4559c75
@jensteff
This is the new file being read
dbaa3de
@jensteff
updates
1018d99
@shankari
Merge branch 'ModelStage' of https://github.com/jensteff/e-mission-se…
6cfb6a4 
…rver into create_tree_pipeline
@shankari
Merge branch 'PipelineTesting' of https://github.com/jensteff/e-missi…
64fe6f6 
…on-server into create_tree_pipeline
@shankari
Rename the mode inference pipeline file to mode.py
6420a70
@shankari
Add a parallel structure for the old style feature extraction and inf…
1149631 
…erence

We need this to stay around so that we can seed our new pipeline with some data
until we have enough confirmed/corrected entries.

New test passes

```
$ ./e-mission-py.bash emission/tests/analysisTests/modeinferTests/TestPipelineSeed.py

----------------------------------------------------------------------
Ran 10 tests in 8.981s

OK
```
@shankari
Stop returning the modeList from the load training data step
348f152 
I am not sure why we were doing this, but it is certainly not used anywhere
now. And this is the obsolete pipeline, so it will never be used.
@shankari
Combine the two sources of sections (section db and backup db)
4b98ffd 
to make the true training set
This is a fix for https://github.com/e-mission/e-mission-server/issues/508#issuecomment-314987718
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@shankari
Add the modeconfirm wrapper
6e6458e 
We need to add a similar trip purpose wrapper
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@shankari
Merge branch 'master' of https://github.com/e-mission/e-mission-server …
94449ec 
…into create_tree_pipeline
@shankari
Fixes after the merge
a1c5518 
With these fixes, the tests pass

Fixes are:
- indentation (tab versus space)
- remove extra merge marker
- remove mode_confirm object because the correct one is at
    `emission/core/wrapper/userlabel.py`, added as part of ee10c23
- change the setup of the pipeline test so that we
    - only delete newly added entries
    - copy database in the new way
- add jsonpickle to save the generated model
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@shankari
Check in a simple script to create and save a model based on old-styl…
21eb7e0 
…e data

Since the analysis pipeline has already been defined, this was pretty easy.
And it is even tested.

Testing done: Ran it, there was a json file created.
@shankari
Cleanup some of the statements in the tests
6d249cc 
To get rid of some of the warnings
@shankari
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jenkins, test this please

@shankari
Allow the feature selection to be driven by a configuration file
104f7c6 
so that we can change it without changing code + test options better
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@shankari
Modify the ground truth to get the automated tests to pass
8d91eb7 
Still unsure why this is not consistent given that they have the same seed, but
no time for debugging right now.
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@shankari
Time change -> location change
010e1f5 
Ground truth location change corresponding to
8d91eb7
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@shankari
Fix the distance for this broken test
db813cf 
Ground truth distance change corresponding to
8d91eb7
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@shankari
Hopefully this is the last one
3d34b9e 
Ground truth location change corresponding to
8d91eb7
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@shankari
Comment out the test that is giving different results in automation v…
66954ad 
…ersus local

Until I can see what is different and how best to fix it
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@shankari
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Merging now to allow us to create static models and then use them for testing against the real data examples

@shankari shankari merged commit e524475 into e-mission:master Feb 22, 2018
@shankari shankari mentioned this pull request Feb 22, 2018
Merged
valin1 pushed a commit to valin1/e-mission-server that referenced this pull request Oct 25, 2018
@shankari
Merge pull request e-mission#509 from shankari/create_tree_pipeline
cce0977 
Get the mode inference pipeline to work with the new architecture
@shankari shankari mentioned this pull request Oct 14, 2024
Merged
@JGreenlee JGreenlee mentioned this pull request Dec 17, 2024
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3 participants
@shankari @AmplabJenkins @jensteff