Number of cases per day. As a CSV. Data as it should be. EZ to read.
⬇️ Download the Current Data (updated hourly)
📈 View the data in an interactive Chart and Table
Below is the link to a public S3 Object that gets updated hourly from a Lambda running this project's code. Feel free to use it for powering a dashboard or investigating the data yourself
https://gatech-covid-19-data.s3.amazonaws.com/gatech_covid_data.csv
For those who want to run the data scraper locally
git clone [email protected]:davidgamero/gatech-covid-data-scraper.git
cd gatech-covid-data-scraper
pip install -r requirements.txt
python scrape_covid_data.py
Data will be written to gatech_covid_data.csv
Q: Why did I make this?
A: I searched "gatech covid" on GitHub and only got one result which was in R by cjwichman
I believe that pandemic health data should be freely and easily accessible and wanted to make my own plots, so I decided to make a Python scraper implementation to better understand the data.
My main improvements were automated extraction of case numbers aggregated by day even for rows that group cases. This was trickier than I expected for rows that differ in formatting ex: due to the GATech Health Alert Site's wildly inconsistent conventions 🤢 I used a series of Regular Expressions to parse for keywords and then extract integers using observed rules. All fuzzy extractions are printed to the command line for manual verification.
The patterns currently recognized are
- Rows with a 'Position' value of 'Students (N)' or 'Various (N)' where N is the number of cases, which I extracted with a regex capture group for the numeric contents of the parentheses
- Rows with a 'Position' value of 'Students' OR 'Various'. For these rows I use a regex search to find the first integer present in the 'Campus Impact' column as the number of cases. It would be nice to eventually check that there is only a single match and throw an error for manual review if there are multiple integers.
To deploy as an AWS Lambda function build gatech-covid-data-lambda.zip with build_lambda_zip.sh and upload to a Python Lambda with s3:PutObject,s3:PutObjectAcl permissions to the target bucket
chmod +x build_lambda_zip.sh
./build_lambda_zip.sh
Upload gatech-covid-data-lambda.zip to AWS Lambda
I recommend increasing timeout to >5s as the data size increases over time with more rows
Shout out to cjwichman for paving the way with their gatech_covid repo