Results - Data Panel

[chrtannus]

Collapsible panel (drawer) that contains the results tables.

• 3 main views/tables: Motifs, Tracks, Clusters ("TFs") -- see the columns from the Cytoscape app below
• Click the main table's row to visualize extra information:
  • The motif/track description¹
  • The motif's sequence logo¹ -- see Results - Data Panel - Sequence Logos #15
  • The list of Transcription Factors²
  • The list of Targets²
• Selecting a row should select its top TF ("regulator")
• Select a TF to add that regulator and its target genes ("regulated") to the network
• Edge color legend (Cluster Code)
• Make sure the Cluster Code column can be sorted properly: group by the first letter (M or T), then sort by the cluster number)
• Search field: filters Motifs, Tracks and Clusters

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The Cytoscape app displays 3 views (tabs):

• Motif-centric View
• Track-centric View
• TF-centric View (aka "Clusters")

Only the Transcription Factors tab is important for the analysis, according to Veronique (Bader Lab), but the data in the other ones can be important when writing a research paper. However, other users may need the Motifs and Tracks tabs as well.

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These are the tabs in the Cytoscape app's results panel:

Footnotes

1. For a CLUSTER, show the detailed information (e.g. description, sequence logo) of the first motif/track by default, but the user must be able to select another motif/track. ↩ ↩²

2. For a CLUSTER, indicate which TFs are included in the cluster's selected motif/track; do the same for the target genes. ↩ ↩²