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fix(store/v2/pebble): handle version 0 in keys #22524

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Nov 15, 2024
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@kocubinski kocubinski commented Nov 14, 2024

Description

Closes: #22523

Fixes handling of version 0 in keys. Version 0 is supported on the write side, but surprisingly not on read.

Also includes a fix for very large batches; I exceeded the 4gb limit in InitGenesis in load testing.


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Summary by CodeRabbit

  • New Features
    • Introduced size tracking for key-value batches to enhance batch management.
  • Bug Fixes
    • Improved error handling for empty version slices in database operations.
    • Enhanced iteration logic to correctly handle tombstones and versions.
  • Refactor
    • Adjusted variable declarations and control flow in the iterator for robustness.

@kocubinski kocubinski requested review from cool-develope and a team as code owners November 14, 2024 02:31
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📝 Walkthrough

Walkthrough

The pull request introduces modifications to the pebbledb package, focusing on enhancing the Batch struct for size management, improving error handling for key versioning in the Database struct, and refining the iteration logic in the iterator struct. A new field size is added to track the cumulative size of key-value pairs, while new checks prevent errors from empty version slices. These changes collectively aim to improve the robustness and functionality of the PebbleDB implementation.

Changes

File Path Change Summary
store/v2/storage/pebbledb/batch.go Added size int to Batch struct; introduced keyValueSize function; modified set method for size management.
store/v2/storage/pebbledb/db.go Enhanced Prune and getMVCCSlice methods with checks for empty version byte slices to prevent decoding errors.
store/v2/storage/pebbledb/iterator.go Modified DebugRawIterate for improved handling of versioning and tombstone logic; adjusted error handling and iteration flow.

Assessment against linked issues

Objective Addressed Explanation
Prevent decoding errors for empty version slices (22523)
Ensure robustness in batch operations (22523)

Possibly related PRs

Suggested labels

C:Store

Suggested reviewers

  • tac0turtle
  • julienrbrt
  • cool-develope

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const (
oneIf64Bit = ^uint(0) >> 63
maxUint32OrInt = (1<<31)<<oneIf64Bit - 1
maxVarintLen32 = 5
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these consts are duplicated from the pebbledb library for size calculation.

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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (5)
store/v2/storage/pebbledb/batch.go (3)

23-27: Consider adding documentation for platform-specific constants

The constants are well-designed for handling platform-specific size limits. Consider adding comments explaining the bit manipulation logic for better maintainability.

 const (
+	// oneIf64Bit is 1 on 64-bit platforms and 0 on 32-bit platforms
 	oneIf64Bit     = ^uint(0) >> 63
+	// maxUint32OrInt is math.MaxUint32 on 32-bit platforms and math.MaxInt on 64-bit platforms
 	maxUint32OrInt = (1<<31)<<oneIf64Bit - 1
+	// maxVarintLen32 is the maximum length of a varint-encoded 32-bit integer
 	maxVarintLen32 = 5
 )

29-31: Document size calculation components

The size calculation is correct but would benefit from documentation explaining the components of the calculation.

+// keyValueSize returns the total size needed to store a key-value pair,
+// including the overhead for varint encoding and metadata
 func keyValueSize(key, value []byte) int {
 	return len(key) + len(value) + 1 + 2*maxVarintLen32
 }

65-78: Improve error message for size limit exceeded case

The size management logic is well-implemented, but the error message could be more informative by including the actual sizes.

 		if err := b.batch.Commit(&pebble.WriteOptions{Sync: b.sync}); err != nil {
-			return fmt.Errorf("max batch size exceed: failed to write PebbleDB batch: %w", err)
+			return fmt.Errorf("batch size limit exceeded (current: %d, new: %d, max: %d): failed to write PebbleDB batch: %w",
+				b.size, size, maxUint32OrInt, err)
 		}
store/v2/storage/pebbledb/iterator.go (1)

Line range hint 238-244: Fix incorrect variable used in tombstone decoding.

There's a bug in the tombstone decoding logic where it uses vBz (version bytes) instead of tombBz (tombstone bytes).

Apply this fix:

  var tombstone uint64
  if len(tombBz) > 0 {
-   tombstone, err = decodeUint64Ascending(vBz)
+   tombstone, err = decodeUint64Ascending(tombBz)
    if err != nil {
      panic(fmt.Errorf("failed to decode value tombstone: %w", err))
    }
  }
store/v2/storage/pebbledb/db.go (1)

438-444: Consider explicit handling of version 0 comparison.

While the implementation correctly handles empty version bytes, consider adding explicit handling for the case where both the target version and key version are 0 to make the logic more robust.

Consider this modification:

 var keyVersion uint64
 // handle version 0 (no version prefix)
 if len(vBz) > 0 {
     keyVersion, err = decodeUint64Ascending(vBz)
     if err != nil {
         return nil, fmt.Errorf("failed to decode key version: %w", err)
     }
+} else if version == 0 {
+    // Special case: both target and key versions are 0
+    keyVersion = 0
 }
📜 Review details

Configuration used: .coderabbit.yml
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between e74799e and b17c4b3.

📒 Files selected for processing (3)
  • store/v2/storage/pebbledb/batch.go (3 hunks)
  • store/v2/storage/pebbledb/db.go (2 hunks)
  • store/v2/storage/pebbledb/iterator.go (1 hunks)
🧰 Additional context used
📓 Path-based instructions (3)
store/v2/storage/pebbledb/batch.go (1)

Pattern **/*.go: Review the Golang code for conformity with the Uber Golang style guide, highlighting any deviations.

store/v2/storage/pebbledb/db.go (1)

Pattern **/*.go: Review the Golang code for conformity with the Uber Golang style guide, highlighting any deviations.

store/v2/storage/pebbledb/iterator.go (1)

Pattern **/*.go: Review the Golang code for conformity with the Uber Golang style guide, highlighting any deviations.

🔇 Additional comments (5)
store/v2/storage/pebbledb/batch.go (3)

20-21: LGTM: Size tracking field addition

The addition of the size field to track cumulative batch size is well-designed and aligns with the PR's objective of handling large data sizes.


48-48: LGTM: Proper size initialization

The size initialization correctly accounts for the version key-value pair using the new helper function.


65-73: Verify handling of large genesis data

The auto-commit mechanism should handle the large genesis data case mentioned in the PR objectives. Let's verify this with a test case.

store/v2/storage/pebbledb/iterator.go (1)

226-232: LGTM: Version 0 handling looks correct.

The changes properly handle the case where a key has no version prefix (version 0) by checking the length of the version bytes before attempting to decode.

Let's verify the version 0 handling with the following script:

store/v2/storage/pebbledb/db.go (1)

241-247: LGTM! Robust handling of version 0 keys.

The implementation correctly handles both versioned and unversioned keys by checking the version byte slice length before decoding. This prevents the "insufficient bytes to decode uint64" error mentioned in issue #22523.

Let's verify the version handling implementation:

@kocubinski kocubinski added this pull request to the merge queue Nov 15, 2024
Merged via the queue into main with commit 005ecad Nov 15, 2024
75 of 82 checks passed
@kocubinski kocubinski deleted the kocu/pebble-ver0-batch branch November 15, 2024 23:13
alpe added a commit that referenced this pull request Nov 18, 2024
* main:
  fix(cosmovisor): premature upgrade on restart (#22528)
  fix(store/v2/pebble): handle version 0 in keys (#22524)
alpe added a commit that referenced this pull request Nov 21, 2024
* main:
  build(deps): Bump cosmossdk.io/math from 1.3.0 to 1.4.0 (#22580)
  fix(server/v2/api/telemetry): enable global metrics  (#22571)
  refactor(server/v2/cometbft): add `codec.Codec` and clean-up APIs (#22566)
  feat(core/coretesting): make memDB satisfy db.Db interface (#22570)
  Merge commit from fork
  fix(server(/v2)): fix fallback genesis path (#22564)
  fix: only overwrite context chainID when necessary (#22568)
  docs(client): Update setFeeGranter and setFeePayer comments (#22526)
  fix(baseapp): populate header info in `NewUncachedContext` (#22557)
  build(deps): Bump buf.build/gen/go/cometbft/cometbft/protocolbuffers/go from 1.35.1-20240701160653-fedbb9acfd2f.1 to 1.35.2-20240701160653-fedbb9acfd2f.1 in /api (#22551)
  build(deps): Bump github.com/creachadair/atomicfile from 0.3.5 to 0.3.6 in /tools/confix (#22552)
  docs: Update reference of Approximation (#22550)
  fix(server/v2/comebft): wire missing services + fix simulation (#21964)
  ci: fix permissions for GITHUB_TOKEN on dependabot workflows (#22547)
  ci: fix permissions for GITHUB_TOKEN in spell check workflow (#22545)
  build(deps): Bump google.golang.org/protobuf from 1.35.1 to 1.35.2 (#22537)
  fix(cosmovisor): premature upgrade on restart (#22528)
  fix(store/v2/pebble): handle version 0 in keys (#22524)
  refactor(server/v2/telemetry): swap redirects (#22520)
  docs: Update content in  CODE_OF_CONDUCT.md (#22518)
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[Bug]: simapp/v2 does not start with pebbledb
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