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28 Open 151 Closed
28 Open 151 Closed
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Issues list

Create FTP Watcher records for 1-26 through 7-16 previous VCV (v2) and RCV files from ClinVar
#266 opened Dec 9, 2024 by theferrit32
@theferrit32
Add interp_explanation to vcv/rcv classifications
#265 opened Dec 5, 2024 by theferrit32
@theferrit32
2
VCV ingest of 2024-11-03 failed due to network error on Dec 5
#262 opened Dec 5, 2024 by theferrit32
Maybe copy xml files up into the xml_archive directory as well as the clinvar_xml dir for the particular run
#259 opened Dec 4, 2024 by theferrit32
Delete parsed prefix when output parsed prefix is not empty
#258 opened Dec 4, 2024 by theferrit32
Archive all v1 data files in bucket into a v1 directory
#256 opened Dec 4, 2024 by theferrit32
Upgrade BQ ingest scripts to v2 Schemas
#255 opened Dec 3, 2024 by larrybabb
@larrybabb
Investigate copy-only job failures
#254 opened Dec 3, 2024 by theferrit32
1
Run all prior v2 VCV XML files and copy existing v2 RCV XML entries into the clinvar_ingest.processing_history table so they can be paired
#250 opened Nov 19, 2024 by theferrit32
@theferrit32
1
Address deprecation warnings
#237 opened Oct 17, 2024 by theferrit32
Investigate long runtimes on vcv parsing
#235 opened Oct 15, 2024 by theferrit32
Add exhaustive input/output file tests
#227 opened Oct 1, 2024 by theferrit32
Create snapshots during internal table creation
#225 opened Sep 30, 2024 by theferrit32
@theferrit32
Add workflow step to BQ Ingest Workflow for automatically seeding and executing Larrys BQ procedures
#219 opened Sep 24, 2024 by toneillbroad
@toneillbroad
Manually copy over past new-schema VCV and RCV files into ingest bucket
#205 opened Jul 22, 2024 by theferrit32
@larrybabb @theferrit32
2
Create post-ingest step to link SCVs to TraitSets through new RCV-SCV mapping table
#189 opened Jun 25, 2024 by theferrit32
@larrybabb
Audit stage for any one-off tables that maybe needed for downstream services
#148 opened May 21, 2024 by toneillbroad
@larrybabb
Alter the VCI service that is used to lookup ClinVar SVC Ids is re-pointed to prod tables
#147 opened May 21, 2024 by toneillbroad
@larrybabb
Make sure all VCEP, GC, CVC and GK-Pilot services point to the new prod ingest tables
#146 opened May 21, 2024 by toneillbroad
@larrybabb
1
Setup new ClinGen ClinVar workflow to point to production environment
#145 opened May 21, 2024 by toneillbroad
Migrate historical stage ClinVar datasets to prod cluster
#144 opened May 21, 2024 by toneillbroad
@larrybabb
Deploy, run and validate temporal table production to support GenomeConnect, VCEP reports, CvC and GKS Production files
#143 opened May 21, 2024 by toneillbroad
Replace DSP ClinVar ingest pipeline in production with the ClinGen version Epic
#138 opened May 17, 2024 by toneillbroad
Add clinvar-ingest per clinvar release Q/A measures to workflow
#134 opened Apr 4, 2024 by toneillbroad
@toneillbroad
1
Create xml_archive metadata table
#119 opened Feb 28, 2024 by theferrit32
ProTip! Exclude everything labeled bug with -label:bug.