Skip to content

Pull requests: broadinstitute/gatk

New pull request New
135 Open 4,340 Closed
135 Open 4,340 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Bring in some performance improvements from genomicsdb
#9059 opened Dec 3, 2024 by nalinigans Loading…
2
Joel gsutil
#9052 opened Nov 21, 2024 by jmthibault79 • Draft
Sample chromosome ploidy support for RWB Echo [VS-1500] ⛔ DO NOT MERGE ⛔
#9051 opened Nov 20, 2024 by mcovarr Loading…
6
[DO NOT MERGE]
#9045 opened Nov 15, 2024 by jamesemery Loading…
6
Yyu test 1
#9026 opened Oct 30, 2024 by yonghaoy • Draft
BQSR: avoid throwing an error when read group is missing in the recal table, and some refactoring.
#9020 opened Oct 28, 2024 by takutosato Loading…
@davidbenjamin
46
Create tools for SV VCF cleaning
#8996 opened Oct 9, 2024 by kjaisingh • Draft
@kjaisingh
22
FlowFeatureMapper speed improvements
#8982 opened Sep 16, 2024 by dror27 • Draft
12
Add a few additional failures to our notes doc
#8980 opened Sep 15, 2024 by RoriCremer Loading…
26
Bundle support for FeatureInputs, references; add CreateBundle tool.
#8944 opened Aug 6, 2024 by cmnbroad • Draft
[DRAFT] Merge master to ah var store again [VS-1178]
#8890 opened Jun 24, 2024 by mcovarr • Draft
1
Add utilites to update Echo filters and reference genotypes
#8867 opened Jun 11, 2024 by chrisvittal Loading…
6
Add keep-contig-names parameter
#8865 opened Jun 6, 2024 by gokalpcelik • Draft
3
Funcotator - removing the required transcript file
#8863 opened Jun 5, 2024 by jonn-smith • Draft
35
Changed flow allele filtering in Mutect2 to work separately on the tumor and the normal samples
#8855 opened Jun 1, 2024 by ilyasoifer • Draft
Rc vs 1365 hatcher testing parquet
#8845 opened May 23, 2024 by RoriCremer • Draft
Added long read walkers from long-running branch.
#8799 opened Apr 29, 2024 by jonn-smith Loading…
32
⛔ [DO NOT MERGE] ⛔ Fix partition grouping bug ⛔
#8785 opened Apr 21, 2024 by mcovarr Loading…
1
add echocallset as an option for integration test
#8757 opened Apr 1, 2024 by RoriCremer Loading…
DRAFT: Use temp snapshot of htsjdk with rans refactoring.
#8730 opened Mar 11, 2024 by cmnbroad • Draft
Leave validation cluster running at end [VS-901]
#8729 opened Mar 11, 2024 by mcovarr Loading…
Test out the preview version of the next GKL (DO NOT MERGE)
#8712 opened Mar 4, 2024 by droazen Loading…
@jamesemery
15
Vs 299 spike speed up integration tests
#8706 opened Feb 29, 2024 by koncheto-broad • Draft
Remove hdfs support for GenomicsDB
#8698 opened Feb 16, 2024 by nalinigans • Draft
Refactoring a confusing method in GATKVariantContextUtils
#8690 opened Feb 13, 2024 by lbergelson • Draft
6
ProTip! Type g i on any issue or pull request to go back to the issue listing page.