tests: install dependencies from poetry.lock instead of duplicating in tox.ini #882
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| name: test | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| jobs: | |
| run: | |
| continue-on-error: True | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: [3.9, "3.10", "3.11", "3.12"] | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@master | |
| - uses: actions/setup-python@master | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: pip install tox poetry | |
| # # set up environment depending on the platform in use | |
| # - if: matrix.os == 'ubuntu-latest' | |
| # name: Install dependencies (ubuntu-latest) | |
| # run: ... | |
| # - if: matrix.os == 'macos-latest' | |
| # name: Install dependencies (macos-latest) | |
| # run: ... | |
| # - if: matrix.os == 'windows-latest' | |
| # name: Install dependencies (windows-latest) | |
| # env: | |
| # ACTIONS_ALLOW_UNSECURE_COMMANDS: true | |
| # run: ... | |
| - if: matrix.os == 'macos-latest' | |
| name: Install dependencies (macos-latest) | |
| run: | | |
| # for some reason this seems to be a necessary step for MacOS images, but not for Ubuntu and Windows | |
| brew install hdf5 | |
| brew install c-blosc | |
| # https://stackoverflow.com/questions/73029883/could-not-find-hdf5-installation-for-pytables-on-m1-mac | |
| echo "HDF5_DIR=/opt/homebrew/opt/hdf5" >> $GITHUB_ENV | |
| echo "BLOSC_DIR=/opt/homebrew/opt/c-blosc" >> $GITHUB_ENV | |
| - if: ${{ (matrix.os == 'ubuntu-latest') || (matrix.os == 'macos-latest') }} | |
| name: Unit tests and coverage (ubuntu-latest, macos-latest) | |
| run: | | |
| pyver=`echo ${{ matrix.python-version }} | tr -d "."` | |
| tox -e py${pyver} -- -m 'not e2e' | |
| tox -e py${pyver}-nb | |
| - if: ${{ (matrix.os == 'ubuntu-latest') || (matrix.os == 'macos-latest') }} | |
| name: Notebook tests (ubuntu-latest, macos-latest) | |
| run: | | |
| pyver=`echo ${{ matrix.python-version }} | tr -d "."` | |
| tox -e py${pyver}-nb | |
| - if: matrix.os == 'windows-latest' | |
| name: Unit tests and coverage (windows-latest) | |
| run: | | |
| $pyver = "${{ matrix.python-version }}" -replace '\.' | |
| tox -e "py$pyver" -- -m 'not e2e' | Tee-Object output.txt -ErrorAction SilentlyContinue | |
| .\scripts\check-tox-output.ps1 output.txt | |
| - if: matrix.os == 'windows-latest' | |
| name: Notebook tests (windows-latest) | |
| run: | | |
| $pyver = "${{ matrix.python-version }}" -replace '\.' | |
| tox -e "py$pyver-nb" | Tee-Object output.txt -ErrorAction SilentlyContinue | |
| .\scripts\check-tox-output.ps1 output.txt | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| fail_ci_if_error: false |