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Apply seqtk PR to improve kseq.h parsing performance #173

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merged 4 commits into from
Sep 21, 2023

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jmarshall
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This applies @kloetzl's lh3/seqtk#123 to klib's kseq.h.

For one large data file on my machine, this reduces kseq_bench2's kstream time from ~1.65s to ~0.92s.
(I have not heavily tested it otherwise.)

@jmarshall jmarshall changed the title Apply seqtk PR to improve parsing performance Apply seqtk PR to improve kseq.h parsing performance Sep 20, 2023
@attractivechaos
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Thanks!

@attractivechaos attractivechaos merged commit c588728 into attractivechaos:master Sep 21, 2023
@jmarshall jmarshall deleted the memchr branch September 21, 2023 22:28
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3 participants