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1. virsearch virsearch Public

   Snakemake workflow to detect and classify viruses in metagenome assemblies.

   Python 18 4

2. magscreen magscreen Public

   Snakemake workflow to screen a set of genomes (e.g., MAGs) against an existing genome database and identify novel species

   Python 8 1

3. metamap metamap Public

   Snakemake workflow to map and quantify microbial genomes in metagenomic reads

   Python 9 5

4. ml-microbiome ml-microbiome Public

   Snakemake workflow to perform machine learning classification of microbiome sequence data

   R 5

5. latinbiota latinbiota Public

   Central repository with scripts and workflows for the analysis of the gut microbiome of the Latinbiota cohort

   R 3

6. gubascreen gubascreen Public

   Protocol for detecting Gubaphage genomes among a set of predicted viral sequences

   Python