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# What is Juicer? #
Juicer is a one-click pipeline for processing terabase scale Hi-C datasets. Using Juicer, you can
- Go from raw fastq files to Hi-C maps binned at many resolutions
- Automatically annotate loops and contact domains with the Juicer tools
- Run the pipeline in the cloud, on LSF, Univa, or SLURM, or on a single CPU
Juicer creates hic files from raw (unaligned) reads derived from a Hi-C experiment.
Juicer Tools Pre creates hic files from aligned Hi-C reads (i.e., lists of Hi-C contacts).
Follow the links below to get started: