Remove line endings from container box id (nextflow-io#4334)

Signed-off-by: Ben Sherman <[email protected]>
abhi18av · Oct 28, 2023 · 5df3399 · 5df3399
1 parent 667f399
commit 5df3399
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/nextflow/src/main/groovy/nextflow/executor/BashWrapperBuilder.groovy b/modules/nextflow/src/main/groovy/nextflow/executor/BashWrapperBuilder.groovy
@@ -250,7 +250,7 @@ class BashWrapperBuilder {
         binding.helpers_script = getHelpersScript()
 
         if( runWithContainer ) {
-            binding.container_boxid = 'export NXF_BOXID="nxf-$(dd bs=18 count=1 if=/dev/urandom 2>/dev/null | base64 | tr +/ 0A)"'
+            binding.container_boxid = 'export NXF_BOXID="nxf-$(dd bs=18 count=1 if=/dev/urandom 2>/dev/null | base64 | tr +/ 0A | tr -d \'\\r\\n\')"'
             binding.container_helpers = containerBuilder.getScriptHelpers()
             binding.kill_cmd = containerBuilder.getKillCommand()
         }