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NeuroDOT v1.2

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@emmaspeh emmaspeh released this 24 Jun 17:22
· 143 commits to main since this release

Changes since NeuroDOT v1.1:

  1. Compatibility with SNIRF format:
  • Updated info.paradigm.synchpt creation in snirf2ndot
  • Added ndot2snirf to convert from NeuroDOT format to SNIRF format
  • Verified compatibility with LUMO
  1. Added NIRS format compatibility:
  • nirs2ndot to convert data from .nirs files to be used in NeuroDOT
  • ndot2nirs to convert NeuroDOT data to .nirs format
  1. Added NIFTI format compatibility:
  • Added nifti_4dfp to convert between .nii and .4dfp format
  • Updated LoadVolumetricData and SaveVolumetricData to be compatible with .nii files
  • Fixed compatibility with ‘nii.gz’ extension
  1. Added new functions:
  • Visualizations: AdjustFoci, Draw_ROIs_on_Cortex, Nuisance_Regress, PlotCapMeasSpaceData_Pairs, Two_D_Image_hist,
    GrayPlot_TimeTrace_Rsd_by_WL
  • Light Modeling: OptProp, PSF_Metrics_200630, threshold5R_new, calc_NN, Generate_pad_from_grid
  • Spatial Transforms: resample_A_to_atlas
  • Reconstruction: MBLL
  1. Updated NeuroDOT Tutorial PowerPoints and Scripts:
  • AlignMe tutorials
  • Script for Generating a Pad File
  • Full Data Processing Overview
  • Visualization Overview
  1. Updates to AlignMe:
  • Updated method for scaling from atlas to participant measurements
  • Updated transform to match pre-multiply convention