ENH: Large overhaul, including initial flowchart of the experiment #111
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oesteban
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This is what the flowchart looks like:
It is done with Mermaid, which is an extension for markdown that allows generating charts from code. You can play with it here |
oesteban
commented
Aug 28, 2023
docs/data-collection/preliminary.md
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| ``` mermaid | ||
| flowchart TB | ||
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| subgraph "Scanning Room" | ||
| direction TB | ||
| sr1[Scanner] | ||
| sr2[Cannula] | ||
| sr3[RB] | ||
| sr4[ECG] | ||
| sr5[ET] | ||
| end | ||
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| subgraph "BIOPAC" | ||
| direction TB | ||
| biopac1[DA100C] | ||
| biopac2[ECG100C MRI] | ||
| biopac3[AMI100D] | ||
| biopac4[STP100D] | ||
| end | ||
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| sr1 --->|Trigger| sb[Syncbox] | ||
| sr2 ---> ga[Gas Analyzer] | ||
| sr3 --->|"Negative (-)"| biopac1[DA100C] | ||
| sr4 ---> biopac2[ECG100C MRI] | ||
| sr5 ---> et[Eye Tracker PC] | ||
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| ga --->|"Channel 3 (CO<sub>2</sub>)"| biopac3 | ||
| ga --->|"Channel 4 (O<sub>2</sub>)"| biopac3 | ||
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| sb --->|USB| pc1["Stimuli presentation Laptop ({{ secrets.hosts.psychopy | default("███") }})"] | ||
| pc1 <--->|Ethernet| et | ||
| pc1 --->|USB| modem[MMBT-S Interface] | ||
| pc1 --->|HDMI| display[Proyector] | ||
| modem --->|25-pin parallel| biopac4 | ||
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| BIOPAC --->|Ethernet| pc2["Physio-recording Laptop ({{ secrets.hosts.acqknowledge | default("███") }})"] | ||
| ``` |
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This is the new flowchart.
oesteban
commented
Aug 28, 2023
| > For this first part, all you have to do is stay still; you can relax and close your eyes if it helps. | ||
| > | ||
| > Are you ready? | ||
| ???+ quote "Tell the participant that we are starting" |
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Example of all script blocks changed to a quote admonition block (in this case it is foldable and it is first rendered expanded, as indicated by the ???+ prefix.
oesteban
commented
Aug 28, 2023
esavary
suggested changes
Aug 28, 2023
| 1. **BIOPAC**. | ||
| The BIOPAC is the main recording hub. | ||
| It directly receives analogical signals from the Scanning Room (for the case of the RB and the ECG). | ||
| Indirectly, it receives the analogical signal from the GA, and digital signals from the *Psychopy laptop* ({{ secrets.hosts.psychopy | default("███") }}). |
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Suggested change
| Indirectly, it receives the analogical signal from the GA, and digital signals from the *Psychopy laptop* ({{ secrets.hosts.psychopy | default("███") }}). | |
| Indirectly, it receives the analogical signal from the GA, the triggers from the scanner and digital signals from the *Psychopy laptop* ({{ secrets.hosts.psychopy | default("███") }}). |
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It actually doesn't receive the trigger from the scanner, it is just one more signal.
| @@ -102,15 +103,15 @@ | |||
| ???+ quote "Participant of Cohort II" | |||
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| Hey [NAME], the next block is a bit long, around 30 minutes. | |||
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| You can close your eyes and even sleep if you wish. | |||
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We may need to change this if we record ET data during DWI
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Can you file a new issue to remind us to change this?
Co-authored-by: esavary <[email protected]>
esavary
approved these changes
Aug 28, 2023
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Several interesting features in addition to the flowchart.
thanksadmonitionquoteadmonition for all verbal exchange scripts in acquisition.