Cannot run ses-048 and ses-041 through fMRIPrep

[celprov]

@oesteban It generates the following error. Did you do something different in the last session (at least not according to sessions note)?

Traceback (most recent call last):
File "/opt/conda/envs/fmriprep/lib/python3.10/multiprocessing/process.py", line 314, in _bootstrap
self.run()
File "/opt/conda/envs/fmriprep/lib/python3.10/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/fmriprep/cli/workflow.py", line 115, in build_workflow
retval["workflow"] = init_fmriprep_wf()
File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/fmriprep/workflows/base.py", line 93, in init_fmriprep_wf
single_subject_wf = init_single_subject_wf(subject_id)
File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/fmriprep/workflows/base.py", line 571, in init_single_subject_wf
raise NotImplementedError("Sophisticated PEPOLAR schemes are unsupported.")
NotImplementedError: Sophisticated PEPOLAR schemes are unsupported.

Does it mean this session needs to be reacquired?

[oesteban]

That's weird, we haven't configured the fieldmaps to be workable by fMRIPrep. Looks like heudiconv inserted some "IntendedFor" fields in some fieldmap within this session only.

[oesteban]

I'm working on consolidating the JSON files AND will soon get to assigning B0FieldIdentifiers, which should address this.

[celprov]

@oesteban I'm still running into this PEPOLAR issue for those two sessions (at 6pm). Do you think it did not finish rsyncing yet or the problem is not solved by the latest changes you made?

cc @acionca

[celprov]

Even the latest fMRIPrep-23.2.0a2 did not successfully run on those two sessions