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Sitemap plugin
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armintoepfer committed Mar 18, 2021
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4 changes: 4 additions & 0 deletions docs/_config.yml
Original file line number Diff line number Diff line change
Expand Up @@ -30,5 +30,9 @@ search_enabled: true
ga_tracking: G-EMBWLZ6CSF
ga_tracking_anonymize_ip: true

url: "https://lima.how"

plugins:
- jekyll-redirect-from
- jekyll-sitemap
- jekyll-seo-tag
5 changes: 5 additions & 0 deletions docs/robots.txt
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@@ -0,0 +1,5 @@
---
layout: none
---
User-agent: *
Sitemap: {{ site.url }}/sitemap.xml

2 comments on commit fcca768

@alanmejiamaza
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Hi, I hope you can help.
I am trying to get some plots using the commands provided in demultiplexed samples (split named). I am using the R terminal:
Rscript --vanilla report_detail.R demux.lima.report,

This is the error I get:

WARNING: ignoring environment value of R_HOME
Error: Problem with filter() input ..2.
x Input ..2 must be a logical vector, not a integer.
i Input ..2 is PassedFilters.
Backtrace:

  1. ├─%>%(...)
  2. ├─dplyr::mutate(., cs = cumsum(n))
  3. ├─dplyr::count(., BarcodePair, ScoreCombined)
  4. ├─dplyr::arrange(., BarcodePair, desc(ScoreCombined))
  5. ├─dplyr::group_by(., BarcodePair)
  6. ├─dplyr::select(., BarcodePair, ScoreCombined)
  7. ├─dplyr::filter(., BarcodePair %in% unique_bps$BarcodePair)
  8. ├─dplyr::filter(., Barcoded, PassedFilters)
  9. ├─dplyr:::filter.data.frame(., Barcoded, PassedFilters)
  10. │ └─dplyr:::filter_rows(.data, ...)
  11. │ ├─base::withCallingHandlers(...)
  12. │ └─mask$eval_all_filter(dots, env_filter)
  13. ├─dplyr:::abort_glue(...)
  14. │ ├─rlang::exec(abort, message = message, class = class, !!!data)
  15. │ └─(function (message = NULL, class = NULL, ..., trace = NULL, parent = NULL, ...
  16. │ └─rlang:::signal_abort(cnd)
  17. │ └─base::signalCondition(cnd)
  18. └─(function (e) ...
    Execution halted

I am new using pacbio files so I am not completely sure about this output. Any help would be very much appreciated.
Thanks

@armintoepfer
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Please follow the guidelines how to file an issue in pbbioconda https://lima.how/#availability

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