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To v1.10.1; Adds support for external morphology/biophysProps in cell element for Neuron/NetPyNE #178

To v1.10.1; Adds support for external morphology/biophysProps in cell element for Neuron/NetPyNE

To v1.10.1; Adds support for external morphology/biophysProps in cell element for Neuron/NetPyNE #178

Workflow file for this run

# This workflow will build a Java project with Maven
# For more information see: https://help.github.com/actions/language-and-framework-guides/building-and-testing-java-with-maven
name: Java CI with Maven
on:
push:
branches: [ master, development, experimental, osb*, test* ]
pull_request:
branches: [ master, development, experimental, osb*, test* ]
jobs:
build_and_test:
runs-on: ${{ matrix.runs-on }}
strategy:
fail-fast: false
matrix:
java: [ '8', '11', '16', '17', '19', '21' ]
runs-on: [ubuntu-latest, macos-12, windows-2019] # Note macos-12, not latest/14, due to hdf5 install issue
exclude:
- runs-on: macos-latest
java: "8"
- runs-on: macos-latest
java: "16"
name: Test on Java ${{ matrix.Java }} on ${{ matrix.runs-on }}
steps:
- uses: actions/checkout@v4
- name: Set up JDK ${{ matrix.Java }}
uses: actions/setup-java@v4
with:
java-version: ${{ matrix.Java }}
distribution: 'temurin'
- name: Install and test (non Win)
env:
main_repo_branch: ${GITHUB_REF_NAME}
if: ${{ matrix.runs-on != 'windows-2019' }}
run: |
export main_repo_branch=${{env.main_repo_branch}}
if [[ ${main_repo_branch} != "master" && ${main_repo_branch} != "development" && ${main_repo_branch} != "experimental" && ${main_repo_branch} != *"osb"* ]]; then main_repo_branch=development ; fi
echo Using branch $main_repo_branch
git clone https://github.com/NeuroML/org.neuroml.model.injectingplugin.git
cd org.neuroml.model.injectingplugin
git checkout $main_repo_branch
mvn install
cd ..
git clone https://github.com/NeuroML/NeuroML2.git
cd NeuroML2
git checkout $main_repo_branch
mvn install
cd ..
git clone https://github.com/LEMS/jLEMS.git
cd jLEMS
git checkout $main_repo_branch
mvn install
cd ..
git clone https://github.com/NeuroML/org.neuroml.model.git
cd org.neuroml.model
git checkout $main_repo_branch
mvn install
cd ..
# Install this package and test with Maven
pwd
mvn install
mvn dependency:tree
- name: Install and test (Win)
if: ${{ matrix.runs-on == 'windows-2019' }}
run: |
# Install org.neuroml.model.injectingplugin
$env:main_repo_branch=$env:GITHUB_REF_NAME
if ( $env:main_repo_branch -ne "master" -and $env:main_repo_branch -ne "development" -and $env:main_repo_branch -ne "experimental" -and $env:main_repo_branch -notlike '*osb*' ) { $env:main_repo_branch="development" }
echo "Using branch $env:main_repo_branch..."
git clone https://github.com/NeuroML/org.neuroml.model.injectingplugin.git
cd org.neuroml.model.injectingplugin
git checkout $env:main_repo_branch
mvn install
cd ..
# Install NeuroML2
echo Using branch $env:GITHUB_REF_NAME
git clone https://github.com/NeuroML/NeuroML2.git
cd NeuroML2
git checkout $env:main_repo_branch
mvn install
cd ..
git clone https://github.com/LEMS/jLEMS.git
cd jLEMS
git checkout $env:main_repo_branch
mvn install
cd ..
git clone https://github.com/NeuroML/org.neuroml.model.git
cd org.neuroml.model
git checkout $env:main_repo_branch
mvn install
cd ..
# Install this package and test with Maven
pwd
mvn install
mvn dependency:tree