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Update README.md
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MicheleBortol authored Aug 20, 2024
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Expand Up @@ -59,7 +59,7 @@ Clicking the link will open a new tab with the viewer displaying the selected co
![Link-List-image](https://github.com/user-attachments/assets/b95c77a3-77c5-4221-83f2-c9c460a83f2e)


- **Autogenerating config file**:
- **Generating custom config files**:

The form allows the user to automatically generate a config file with the selected parameters. After clicking the `Generate Config` button
a config file is generated and attached to the dataset/image. The viewer displaying the autogenerated configuration will open in a new tab.
Expand All @@ -80,8 +80,8 @@ After autogenerating or selecting a config file, the Vitessce viewer is opened i
The omero-vitessce plugin considers all files with the `.json` extension attached to the image or dataset as config files for the viewer.
The config files should follow the vitessce view-config-json format: http://vitessce.io/docs/view-config-json/

#### Autogenerated config files
Config files can be autogenerated for:
#### Custom config files generated from the right-tab
Config files can be generated for:
- `images`
- `datasets`

Expand All @@ -107,7 +107,7 @@ The following fields are available:
The `Expression` and `Cell identities` files are required to show the histograms.
The `Embeddings` file is necessary to show the cells in a scatterplot.

#### Custom config files
#### Attaching preexisting config files
Custom config files should have a `.json` extension and added as attachements to a dataset or an image.
The configuration files does not need to refer to the dataset / image it is attached to and can refer to other images.

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