fix transform function #161
Triggered via pull request
December 16, 2024 05:20
myushen
Status
Failure
Total duration
1h 33m 51s
Artifacts
3
Annotations
20 errors and 21 warnings
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macOS-latest (auto)
No such keg: /opt/homebrew/Cellar/[email protected]
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macOS-latest (auto)
package or namespace load failed for 'HPCell' in namespaceExport(ns, exports):
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macOS-latest (auto)
loading failed
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macOS-latest (auto)
package or namespace load failed for 'HPCell' in namespaceExport(ns, exports):
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macOS-latest (auto)
loading failed
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macOS-latest (auto)
R CMD check found ERRORs
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macOS-latest (auto)
Process completed with exit code 1.
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windows-latest (auto)
package or namespace load failed for 'HPCell' in namespaceExport(ns, exports):
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windows-latest (auto)
loading failed
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windows-latest (auto)
package or namespace load failed for 'HPCell' in namespaceExport(ns, exports):
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windows-latest (auto)
loading failed
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windows-latest (auto)
R CMD check found ERRORs
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windows-latest (auto)
Process completed with exit code 1.
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ubuntu-latest (auto)
Process completed with exit code 1.
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ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
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ubuntu-latest (auto)
[Workflow Telemetry] Error
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ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
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ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
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ubuntu-latest (auto)
[Workflow Telemetry] Error
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ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
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macOS-latest (auto)
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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macOS-latest (auto)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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macOS-latest (auto)
harfbuzz 10.1.0 is already installed and up-to-date.
To reinstall 10.1.0, run:
brew reinstall harfbuzz
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macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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macOS-latest (auto)
macOS's Gatekeeper has been disabled for this Cask
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macOS-latest (auto)
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
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macOS-latest (auto)
namespace ‘SummarizedExperiment’ is not available and has been replaced
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macOS-latest (auto)
namespace ‘SummarizedExperiment’ is not available and has been replaced
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macOS-latest (auto)
replacing previous import ‘broom::tidy’ by ‘tidySingleCellExperiment::tidy’ when loading ‘HPCell’
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macOS-latest (auto)
replacing previous import ‘tidySingleCellExperiment::tidy’ by ‘tidySummarizedExperiment::tidy’ when loading ‘HPCell’
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windows-latest (auto)
dependencies 'BiocVersion', 'BiocStyle' are not available
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windows-latest (auto)
namespace 'SummarizedExperiment' is not available and has been replaced
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windows-latest (auto)
namespace 'SummarizedExperiment' is not available and has been replaced
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windows-latest (auto)
replacing previous import 'broom::tidy' by 'tidySingleCellExperiment::tidy' when loading 'HPCell'
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windows-latest (auto)
replacing previous import 'tidySingleCellExperiment::tidy' by 'tidySummarizedExperiment::tidy' when loading 'HPCell'
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windows-latest (auto)
replacing previous import 'tidySummarizedExperiment::tidy' by 'tidyseurat::tidy' when loading 'HPCell'
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windows-latest (auto)
replacing previous import 'tidySingleCellExperiment::join_transcripts' by 'tidyseurat::join_transcripts' when loading 'HPCell'
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windows-latest (auto)
replacing previous import 'magrittr::set_names' by 'purrr::set_names' when loading 'HPCell'
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windows-latest (auto)
replacing previous import 'broom::tidy' by 'tidySingleCellExperiment::tidy' when loading 'HPCell'
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windows-latest (auto)
replacing previous import 'tidySingleCellExperiment::tidy' by 'tidySummarizedExperiment::tidy' when loading 'HPCell'
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Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "Linux-biocversion-devel-r-auto-results", "macOS-biocversion-release-r-auto-results", "Windows-biocversion-release-r-auto-results".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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Artifacts
Produced during runtime
| Name | Size | |
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Linux-biocversion-devel-r-auto-results
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1.69 MB |
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Windows-biocversion-release-r-auto-results
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1.71 MB |
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macOS-biocversion-release-r-auto-results
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1.7 MB |
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