Ensure pydantic AnyUrl values are converted to fairgraph IRIs

HumanBrainProject · Oct 8, 2024 · 220a132 · 220a132
1 parent 6ebd87a
commit 220a132
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Showing 2 changed files with 16 additions and 3 deletions.
diff --git a/validation_service_api/validation_service/data_models.py b/validation_service_api/validation_service/data_models.py
@@ -437,8 +437,8 @@ def from_kg_object(cls, instance, client, model_id, scope):
 
     def to_kg_object(self, model_project):
         repository = omcore.FileRepository(
-            name=self.source,
-            iri=self.source,
+            name=str(self.source),
+            iri=IRI(str(self.source)),
             #hosted_by=
             #repository_type=
             hash=omcore.Hash(algorithm="SHA-1", digest=self.hash)  # are we sure we're using SHA-1?
@@ -1220,7 +1220,7 @@ def to_kg_object(self, client):
         return omcore.File(
             id=client.uri_from_uuid(self.id) if self.id else None,
             name=self.local_path,
-            iri=IRI(self.download_url),
+            iri=IRI(str(self.download_url)),
             format=get_term("ContentType", self.content_type),
             hash=omcore.Hash(algorithm="SHA-1", digest=self.hash),  # are we sure we're using SHA-1?
             storage_size=self.size,

diff --git a/validation_service_api/validation_service/tests/README.md b/validation_service_api/validation_service/tests/README.md
@@ -12,6 +12,19 @@ The token should be stored in an environment variable `VF_TEST_TOKEN`.
 - pytest
 - pytest-asyncio
 
+## Environment
+
+The following environment variables need to be set:
+
+- KG_SERVICE_ACCOUNT_CLIENT_ID
+- KG_SERVICE_ACCOUNT_SECRET
+- EBRAINS_IAM_BASE_URL
+- EBRAINS_IAM_CLIENT_ID
+- EBRAINS_IAM_SECRET
+- SESSIONS_SECRET_KEY
+- KG_CORE_API_HOST
+- VALIDATION_SERVICE_BASE_URL
+
 ## Running tests
 
 From the "validation_service_api" subdirectory, run: