Changed parameterisation of Loglogistic model

[gowerc]

Closes #273

EDIT - Accidentally merged in changes from #272 as well. This branch therefore should be merged after #272

[github-actions]

Unit Tests Summary

  1 files   36 suites   5m 7s ⏱️
110 tests  84 ✅ 26 💤 0 ❌
801 runs  775 ✅ 26 💤 0 ❌

Results for commit 4c7631b.

♻️ This comment has been updated with latest results.

[github-actions]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
SurvivalLoglogistic	💔	$0.10$	$+29.16$	$+2$	$0$	$0$	$0$

Additional test case details

Test Suite	$Status$	Time on main	$±Time$	Test Case
SurvivalLoglogistic	👶		$+29.09$	SurvivalLogLogistic_can_recover_known_values
SurvivalLoglogistic	👶		$+0.09$	sim_os_loglogistic_is_consistant_with_flexsurv

Results for commit bae17ab

♻️ This comment has been updated with latest results.

[github-actions]

Code Coverage Summary

Filename                       Stmts    Miss  Cover    Missing
---------------------------  -------  ------  -------  --------------------------------
R/brier_score.R                  166       0  100.00%
R/DataJoint.R                     76       2  97.37%   264, 270
R/DataLongitudinal.R             119       1  99.16%   245
R/DataSubject.R                   69       1  98.55%   124
R/DataSurvival.R                  77       0  100.00%
R/defaults.R                      10       6  40.00%   18-57, 84
R/generics.R                      19       1  94.74%   49
R/JointModel.R                   122       8  93.44%   142-144, 194, 198, 240, 286, 292
R/JointModelSamples.R             54       0  100.00%
R/Link.R                          55       4  92.73%   159-162
R/LinkComponent.R                 47       5  89.36%   100, 118, 132-149
R/LongitudinalGSF.R               64       0  100.00%
R/LongitudinalModel.R             35      12  65.71%   68-83
R/LongitudinalQuantities.R        85       8  90.59%   100-107
R/LongitudinalRandomSlope.R       27       0  100.00%
R/LongitudinalSteinFojo.R         57       8  85.96%   113-135
R/Parameter.R                     14       0  100.00%
R/ParameterList.R                 42       1  97.62%   184
R/Prior.R                        236       8  96.61%   480, 576, 588-606
R/Quantities.R                   105       0  100.00%
R/settings.R                      12      12  0.00%    55-69
R/simulations_gsf.R               41       0  100.00%
R/simulations_os.R                11       0  100.00%
R/simulations_rs.R                21       0  100.00%
R/simulations_sf.R                38      38  0.00%    17-107
R/simulations.R                  101       0  100.00%
R/StanModel.R                     15       0  100.00%
R/StanModule.R                   177       6  96.61%   199-200, 242, 253, 388, 416
R/SurvivalExponential.R           10       0  100.00%
R/SurvivalLoglogistic.R           11       0  100.00%
R/SurvivalModel.R                 19       0  100.00%
R/SurvivalQuantities.R           151       6  96.03%   173-178
R/SurvivalWeibullPH.R             11       0  100.00%
R/utilities.R                    145       1  99.31%   13
R/zzz.R                            2       2  0.00%    3-12
TOTAL                           2244     130  94.21%

Diff against main

Filename              Stmts    Miss  Cover
------------------  -------  ------  -------
R/simulations_os.R        0      -5  +45.45%
R/simulations.R           0      -1  +0.99%
TOTAL                     0      -6  +0.27%

Results for commit: 4c7631b

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[gowerc]

as #272 has been merged into main this PR is now isolated again and should be easier to review :)