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R interface #60

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R interface #60

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astamm
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@astamm astamm commented Jun 13, 2022

A space to contribute Quarto notebooks for showing how GUDHI can be interfaced with R to enable the use of statistical analyses provided by the R community.

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The file r-interface/reticulate/reticulate_files/figure-gfm/unnamed-chunk-10-1.png should not be in the repository.

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/.quarto/
*html
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I think you should add _freeze directory in .gitignore, and also remove it from the git repository.

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I think you should add reticulate/reticulate_files/libs directory in .gitignore, and also remove it from the git repository.

analysis you want to share.
- Note: you can use the same YAML header as in
`reticulate/reticulate.qmd` as a number of presets for rendering
are made into the `_quarto.yml` file.
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I think we could add somewhere in this global r-interface README a link to the reticulate/reticulate.md

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Using up-to-date Gudhi library in R
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Is it possible with quarto, when generating *.md files, to force the file name to REDME.md, instead of reticulate.md ?
Thanks to this modification, one can see the md file rendered when going into the reticulate directory


Let us inform the R session that we want to use the virtual environment
`r-reticulate` where we installed all the required Python packages (see
`README` at the root of the project). This is done with:
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Suggested change
`README` at the root of the project). This is done with:
[Bring GUDHI into R](../README.md#bring-gudhi-into-r)). This is done with:

This should make a nice link to the concerned file.

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