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Change to using netcdf modules instead of netcdf-all #144

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Apr 11, 2024
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Change to using netcdf modules instead of netcdf-all #144

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156 changes: 42 additions & 114 deletions pom.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,6 @@
// WARNINGS for postgresql.jar and Cassandra dependencies:
// slf4j, guava, lz4, metrics, netty, snappy, aws-crt.
mvn package //Creates a war in \programs\mavenERDDAP\ERDDAP\target
(then copy netcdfAll-x.x.x.jar into /lib)

or: mvn clean install -U //clears out cached information (more thoroughly than 'clean') and does it all?

Expand All @@ -46,6 +45,7 @@
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<erddapcontent.download.version>v2.23</erddapcontent.download.version>
<erddapreffiles.download.version>1.0.0</erddapreffiles.download.version>
<netcdfJavaVersion>5.5.3</netcdfJavaVersion>
</properties>

<repositories>
Expand Down Expand Up @@ -164,19 +164,6 @@
</target>
</configuration>
</execution>
<execution>
<?m2e execute onConfiguration,onIncremental?>
<id>download-netcdf</id>
<phase>validate</phase>
<goals>
<goal>run</goal>
</goals>
<configuration>
<target>
<get src="https://downloads.unidata.ucar.edu/netcdf-java/5.5.3/netcdfAll-5.5.3.jar" dest="${project.basedir}/WEB-INF/lib/netcdfAll-5.5.3.jar" skipexisting="true" verbose="true"/>
</target>
</configuration>
</execution>
<execution>
<?m2e execute onConfiguration?>
<id>make-download-cache-dir</id>
Expand Down Expand Up @@ -454,149 +441,90 @@
<version>2.0.0</version>
</dependency>

<!-- To use downloaded local netcdf-all:
download from https://downloads.unidata.ucar.edu/netcdf-java/
or e.g., repo/edu/ucar/netcdfAll/5.5.3/netcdfAll-5.5.3.jar
[This approach is based on second answer from
https://stackoverflow.com/questions/3765903/how-to-include-local-jar-files-in-maven-project ]
-->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>netcdfAll</artifactId>
<version>5.5.3</version> <!-- version number duplicated several times below -->
<artifactId>cdm-core</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>compile</scope>
</dependency>

<!-- These will be needed if I ever switch away from netcdfAll.
Published advice https://docs.unidata.ucar.edu/netcdf-java/current/userguide/using_netcdf_java_artifacts.html
and Jan 24, 2022 email from Jennifer Oxelson Ganter
and a set of runtime modules from https://docs.unidata.ucar.edu/netcdf-java/current/userguide/file_types.html
To figure out which module has a given class, Google, e.g.: github netcdf-java ucar nc2 geotiff GeotiffWriter

Browse repository (probably unidata-all): https://artifacts.unidata.ucar.edu/#browse/browse
-->

<!-- Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fbufr - ->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>bufr</artifactId>
<version>5.5.3</version> <!- - this number duplicated many times below - ->
<scope>runtime</scope>
<artifactId>cdm-misc</artifactId>
<version>${netcdfJavaVersion}</version>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-core
Fundamental!
Has ucar.nc2.Variable and Variable.Builder (and other builders).
Has ucar.nc2.ncml.NcmlReader, Aggregation, AggregationExisting, AggregationFmrc, AggregationOuterDimension,
AggregationUnion, etc- ->

<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-core</artifactId>
<version>5.5.3</version>
<scope>compile</scope>
<artifactId>udunits</artifactId>
<version>${netcdfJavaVersion}</version>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-image - ->

<!-- The following are from netcdf and add support for various file types. -->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-image</artifactId>
<version>5.5.3</version>
<artifactId>netcdf4</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-mcidas - ->

<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-mcidas</artifactId>
<version>5.5.3</version>
<artifactId>grib</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-misc
Has ucar.nc2.geotiff. - ->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-misc</artifactId>
<version>5.5.3</version>
<scope>compile</scope>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-radial
probably not needed- ->

<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-radial</artifactId>
<version>5.5.3</version>
<artifactId>bufr</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-vis5d - ->

<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-vis5d</artifactId>
<version>5.5.3</version>
<artifactId>opendap</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fcdm-zarr
zarr isn't included in netcdfAll
BUG in 5.5.3 detected at EDDGridFromNcFiles.testNcml(EDDGridFromNcFiles.java:5529)
so I can't include zarr module v5.5.3 with distribution - ->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-zarr</artifactId>
<version>5.5.3</version>
<scope>runtime</scope>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fclcommon
Referenced in Jennifer's email. Has ucar.nc2.dt.image... and some ucar.nc2.iosp...
But I distrust artifacts with version=5.1.0. - ->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>clcommon</artifactId>
<version>5.1.0</version>
<scope>compile</scope>
</dependency> - ->
<!- - d4* is probably dap4: not needed - ->
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fgrib - ->

<dependency>
<groupId>edu.ucar</groupId>
<artifactId>grib</artifactId>
<version>5.5.3</version>
<artifactId>cdm-radial</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fhttpservices - ->

<dependency>
<groupId>edu.ucar</groupId>
<artifactId>httpservices</artifactId>
<version>5.5.3</version>
<scope>compile</scope>
<artifactId>cdm-image</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Flegacy - ->

<dependency>
<groupId>edu.ucar</groupId>
<artifactId>legacy</artifactId>
<version>5.5.3</version>
<scope>compile</scope>
<artifactId>cdm-mcidas</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fnetcdf doesn't have 5.x - ->
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fnetcdf-java doesn't have 5.5.3+ - ->
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fnetcdf4
This is for writing netcdf4 files with linked C library. - ->

<dependency>
<groupId>edu.ucar</groupId>
<artifactId>netcdf4</artifactId>
<version>5.5.3</version>
<artifactId>cdm-s3</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fopendap - ->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>opendap</artifactId>
<version>5.5.3</version>
<scope>compile</scope>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fucar%2Fudunits
Marked as needed by dependency:analyze - ->

<dependency>
<groupId>edu.ucar</groupId>
<artifactId>udunits</artifactId>
<version>5.5.3</version>
<scope>compile</scope>
<artifactId>cdm-zarr</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<!- - Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fwisc%2Fssec%2Fvisad

<!-- Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fwisc%2Fssec%2Fvisad
Marked as needed by dependency:analyze - ->
<dependency>
<groupId>edu.wisc.ssec</groupId>
Expand Down