GitHub - ComparativeGenomicsToolkit/pinchesAndCacti: Library for constructing pinch graphs and cactus graphs

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Library for constructing pinch graphs and cactus graphs

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Name		Name	Last commit message	Last commit date
Latest commit History 139 Commits
externalTools		externalTools
impl		impl
inc		inc
tests		tests
.travis.yml		.travis.yml
Makefile		Makefile
README		README
__init__.py		__init__.py
include.mk		include.mk

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This is a library for creating pinch graphs (generalised overlap graphs) and cactus graphs. 

The project should be located in the same directory containing sonLib (https://github.com/benedictpaten/sonLib), which must be installed.
Given this requirement a simple 'make all' should be enough to build the project. 'make test' will then do a batch of obligatory tests.