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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 348 150

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 22 14

Repositories

Showing 10 of 401 repositories
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 25 9 286 9 Updated Dec 15, 2024
  • txtox Public

    Experiments to relate gene expression and anatomical location

    AllenInstitute/txtox’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 14, 2024
  • spatial_compare Public

    package for comparing spatial transcriptomics datasets

    AllenInstitute/spatial_compare’s past year of commit activity
    Jupyter Notebook 4 9 10 8 Updated Dec 14, 2024
  • EM_MC_paper_figures Public

    Notebooks for analyzing and generating figures for EM MC paper

    AllenInstitute/EM_MC_paper_figures’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Dec 14, 2024
  • ACE Public

    R Shiny app for comparison of annotations (e.g., cell type assignments)

    AllenInstitute/ACE’s past year of commit activity
    R 1 1 5 (1 issue needs help) 0 Updated Dec 14, 2024
  • cell_type_mapper Public

    Repository for storing prototype functionality implementations for the BKP

    AllenInstitute/cell_type_mapper’s past year of commit activity
    Python 18 4 4 2 Updated Dec 13, 2024
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 54 22 13 5 Updated Dec 13, 2024
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Dec 13, 2024
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 4 BSD-3-Clause 1 51 4 Updated Dec 13, 2024
  • npc_sessions_cache Public

    Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.

    AllenInstitute/npc_sessions_cache’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 12, 2024
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