AMICI v0.23.0 #46
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Deploy | |
| on: | |
| release: | |
| types: | |
| - published | |
| jobs: | |
| pypi: | |
| name: Deploy PyPI | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| environment: | |
| name: pypi | |
| url: https://pypi.org/p/amici | |
| permissions: | |
| id-token: write | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 20 | |
| - name: Set up SWIG | |
| uses: ./.github/actions/setup-swig | |
| - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV | |
| - name: Remove direct dependencies from setup.cfg | |
| # Remove any "git+https"-based dependencies that are not supported | |
| # by PyPI and are only required for testing. | |
| run: sed -i '/git+https/d' python/sdist/setup.cfg | |
| - name: sdist | |
| run: scripts/buildSdist.sh | |
| - name: Publish a Python distribution to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| packages-dir: python/sdist/dist | |
| bioSimulatorsUpdateCliAndDockerImage: | |
| name: Release to BioSimulators | |
| needs: pypi | |
| runs-on: ubuntu-22.04 | |
| env: | |
| # Owner/repository-id for the GitHub repository for the downstream command-line interface and Docker image | |
| DOWNSTREAM_REPOSITORY: biosimulators/Biosimulators_AMICI | |
| # Username/token to use the GitHub API to trigger an action on the GitHub repository for the downstream | |
| # command-line interface and Docker image. Tokens can be generated at https://github.com/settings/tokens. | |
| # The token should have the scope `repo` | |
| GH_ISSUE_USERNAME: ${{ secrets.BIOSIMULATORS_USERNAME }} | |
| GH_ISSUE_TOKEN: ${{ secrets.BIOSIMULATORS_TOKEN }} | |
| steps: | |
| - name: Trigger GitHub action that will build and release the downstream command-line interface and Docker image | |
| run: | | |
| PACKAGE_VERSION="${GITHUB_REF/refs\/tags\/v/}" | |
| WORKFLOW_FILE=ci.yml | |
| curl \ | |
| -X POST \ | |
| -u ${GH_ISSUE_USERNAME}:${GH_ISSUE_TOKEN} \ | |
| -H "Accept: application/vnd.github.v3+json" \ | |
| https://api.github.com/repos/${DOWNSTREAM_REPOSITORY}/actions/workflows/${WORKFLOW_FILE}/dispatches \ | |
| -d "{\"ref\": \"dev\", \"inputs\": {\"simulatorVersion\": \"${PACKAGE_VERSION}\", \"simulatorVersionLatest\": \"true\"}}" |