Support for PEtab SciML in jax #3516
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| name: SBML | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| - master | |
| - release** | |
| pull_request: | |
| paths: | |
| - .github/workflows/test_sbml_semantic_test_suite.yml | |
| - python/sdist/amici/de_export.py | |
| - python/sdist/amici/de_model_components.py | |
| - python/sdist/amici/sbml_import.py | |
| - python/sdist/amici/import_utils.py | |
| - scripts/run-SBMLTestsuite.sh | |
| - tests/testSBMLSuite.py | |
| - tests/conftest.py | |
| check_suite: | |
| types: [requested] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| name: SBML Semantic Test Suite | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| cases: ["1-250", "251-500", "501-750", "751-1000", | |
| "1000-1250", "1251-"] | |
| python-version: [ "3.11" ] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Install apt dependencies | |
| uses: ./.github/actions/install-apt-dependencies | |
| - run: AMICI_PARALLEL_COMPILE="" ./scripts/installAmiciSource.sh | |
| - run: AMICI_PARALLEL_COMPILE="" ./scripts/run-SBMLTestsuite.sh ${{ matrix.cases }} | |
| - name: "Upload artifact: SBML semantic test suite results" | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: amici-semantic-results-${{ matrix.cases }} | |
| path: tests/amici-semantic-results | |
| - name: Codecov SBMLSuite | |
| if: github.event_name == 'pull_request' || github.repository_owner == 'AMICI-dev' | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: coverage_SBMLSuite.xml | |
| flags: sbmlsuite | |
| fail_ci_if_error: true |