Support for PEtab SciML in jax #3501
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: SBML | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| - master | |
| - release** | |
| pull_request: | |
| paths: | |
| - .github/workflows/test_sbml_semantic_test_suite.yml | |
| - python/sdist/amici/de_export.py | |
| - python/sdist/amici/de_model_components.py | |
| - python/sdist/amici/sbml_import.py | |
| - python/sdist/amici/import_utils.py | |
| - scripts/run-SBMLTestsuite.sh | |
| - tests/testSBMLSuite.py | |
| - tests/conftest.py | |
| check_suite: | |
| types: [requested] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| name: SBML Semantic Test Suite | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| cases: ["1-250", "251-500", "501-750", "751-1000", | |
| "1000-1250", "1251-"] | |
| python-version: [ "3.11" ] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Install apt dependencies | |
| uses: ./.github/actions/install-apt-dependencies | |
| - run: AMICI_PARALLEL_COMPILE="" ./scripts/installAmiciSource.sh | |
| - run: AMICI_PARALLEL_COMPILE="" ./scripts/run-SBMLTestsuite.sh ${{ matrix.cases }} | |
| - name: "Upload artifact: SBML semantic test suite results" | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: amici-semantic-results-${{ matrix.cases }} | |
| path: tests/amici-semantic-results | |
| - name: Codecov SBMLSuite | |
| if: github.event_name == 'pull_request' || github.repository_owner == 'AMICI-dev' | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: coverage_SBMLSuite.xml | |
| flags: sbmlsuite | |
| fail_ci_if_error: true |