Fix updating of PiecewiseConstantCoalescentModel #13
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| name: Testing | |
| on: [push] | |
| jobs: | |
| build-linux: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.7, 3.8, 3.9, '3.10'] | |
| os: [ubuntu-latest, macos-latest] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install GSL linux | |
| if: matrix.os == 'ubuntu-latest' | |
| run: sudo apt-get install -y libgsl0-dev | |
| - name: Install GSL macos | |
| if: matrix.os == 'macos-latest' | |
| run: brew install gsl | |
| - name: Checkout physher | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: 4ment/physher | |
| path: physher | |
| - name: Install physher | |
| run: | | |
| cmake -S physher/ -B physher/build -DBUILD_CPP_WRAPPER=on -DBUILD_TESTING=on | |
| sudo cmake --build physher/build/ --target install | |
| - name: Checkout torchtree | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: 4ment/torchtree | |
| path: torchtree | |
| - name: Install torchtree | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install torchtree/ | |
| - name: Checkout torchtree-physher | |
| uses: actions/checkout@v3 | |
| with: | |
| path: | |
| torchtree-physher | |
| - name: Install torchtree-physher | |
| working-directory: torchtree-physher | |
| run: | | |
| pip install .[test] | |
| - name: Test with pytest | |
| working-directory: torchtree-physher | |
| run: | | |
| export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH | |
| pytest |