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Sequence Models in JAX!

Work in Progress...

This page will eventually contain the following implementations:

  • PSSM
  • KMEANS (aka Mixture-PSSM)
  • LEARN_MSA (parameter-free model that just fits an "MSA" to match known stats)
  • MRF (aka. GREMLIN, plmDCA, mfDCA, arDCA, bmDCA)
  • V/AE (autoencoders)