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I think supporting krona output is not necessarily the way to go. Perhaps instead outputting NCBI taxonomy number would be a better use of time, so that it's easy for people to feed their results in to a lot of downstream analyses, not just krona.
I like the Krona visualization, but it is glitchy with large-ish datasets (RNAseq, 4M reads).
https://gist.github.com/taylorreiter/353da32b73242f3686e4967c83de62c8
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