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support krona output? #178

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ctb opened this issue Apr 18, 2017 · 2 comments
Closed

support krona output? #178

ctb opened this issue Apr 18, 2017 · 2 comments

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@ctb
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ctb commented Apr 18, 2017

https://gist.github.com/taylorreiter/353da32b73242f3686e4967c83de62c8

@taylorreiter
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I think supporting krona output is not necessarily the way to go. Perhaps instead outputting NCBI taxonomy number would be a better use of time, so that it's easy for people to feed their results in to a lot of downstream analyses, not just krona.

I like the Krona visualization, but it is glitchy with large-ish datasets (RNAseq, 4M reads).

Originally posted on #174, and added to #195

@ctb
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ctb commented Mar 11, 2018

sourmash lca and https://github.com/dib-lab/2018-ncbi-lineages now handle various bits of this. sourmash lca is the way forward for taxonomy in sourmash, at least for now.

@ctb ctb closed this as completed Mar 11, 2018
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