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    • HTML
      Apache License 2.0
      0000Updated Dec 12, 2024Dec 12, 2024
    • Repository for introduction to RNA seq analysis in python. Workshop hosted by the GCC and led by Reem Elgaish and Ryan Mulqueen.
      0000Updated Dec 4, 2024Dec 4, 2024
    • copykit

      Public
      Toolkit for single-cell copy number analysis
      R
      Other
      41840Updated Oct 15, 2024Oct 15, 2024
    • R
      1300Updated Oct 15, 2024Oct 15, 2024
    • Pan-cancer CNA paper
      R
      0000Updated Sep 30, 2024Sep 30, 2024
    • code for generating the figures for the PRECISE trial paper
      R
      MIT License
      0000Updated Aug 31, 2024Aug 31, 2024
    • Decoding the Archetypes and Ecotypes of Triple-Negative Breast Cancer in Response to Chemotherapy
      R
      0100Updated Aug 28, 2024Aug 28, 2024
    • Single cell genome and epigenome co-profiling reveals hardwiring and plasticity in breast cancer
      R
      0000Updated Aug 5, 2024Aug 5, 2024
    • vignettes

      Public
      2000Updated Jul 2, 2024Jul 2, 2024
    • 2300Updated Jul 2, 2024Jul 2, 2024
    • copykat

      Public
      R
      Other
      55216541Updated Jun 25, 2024Jun 25, 2024
    • Arc-well

      Public
      Scripts for the Arc-well paper
      R
      1200Updated Dec 8, 2023Dec 8, 2023
    • The Human Breast Cell Atlas results.
      0060Updated Jun 6, 2023Jun 6, 2023
    • Code for the Mission Bio TNBC paper
      R
      0000Updated Jun 2, 2023Jun 2, 2023
    • Repository for codes for the HBCA paper
      R
      103500Updated Mar 17, 2023Mar 17, 2023
    • This is the User Guide for the CopyKit R Package
      TeX
      0200Updated Feb 8, 2023Feb 8, 2023
    • Scripts (demultiplexing) used in the SNuBar-ATAC manuscript
      Shell
      0110Updated Nov 17, 2022Nov 17, 2022
    • R
      2100Updated Oct 6, 2022Oct 6, 2022
    • scquantum

      Public
      R
      GNU General Public License v2.0
      0100Updated Apr 1, 2022Apr 1, 2022
    • CellTrek

      Public
      R
      19111290Updated Mar 27, 2022Mar 27, 2022
    • Scripts to reproduce the figures from the CopyKit manuscript
      HTML
      MIT License
      0000Updated Mar 11, 2022Mar 11, 2022
    • Scripts to generate plots used for scDNA precision clonality sample
      R
      1000Updated Jan 23, 2022Jan 23, 2022
    • RcppML

      Public
      Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more
      C++
      GNU General Public License v2.0
      16000Updated Dec 1, 2021Dec 1, 2021
    • ACT_paper

      Public
      Scripts used for the ACT paper
      HTML
      41200Updated May 6, 2021May 6, 2021
    • MVA_CNA

      Public
      Moving average to calculate copy numbers from 10X RNAseq
      R
      1200Updated Nov 12, 2019Nov 12, 2019
    • pmultinom

      Public
      R
      0000Updated Sep 20, 2019Sep 20, 2019
    • scopit

      Public
      R
      2500Updated Feb 20, 2019Feb 20, 2019