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    • OSS-DBSv2

      Public
      Open-Source Simulation platform for Deep Brain Stimulation
      Python
      GNU General Public License v3.0
      4720Updated Dec 14, 2024Dec 14, 2024
    • R package to work with oscilloscope recordings.
      R
      GNU General Public License v3.0
      0000Updated Nov 5, 2024Nov 5, 2024
    • R script for image analysis
      R
      GNU General Public License v3.0
      0000Updated Oct 10, 2024Oct 10, 2024
    • R package for statistics of fluorescence microscopy images
      R
      GNU General Public License v3.0
      0210Updated Oct 2, 2024Oct 2, 2024
    • Supporting infomation to "Influence of cultivation methods on the lengths of primary cilia"
      R
      GNU General Public License v3.0
      0000Updated Jul 26, 2024Jul 26, 2024
    • R package to detect cilia and other colored structures in confocal fluorescence microscopy images
      R
      GNU General Public License v3.0
      0100Updated Apr 4, 2024Apr 4, 2024
    • readCzi

      Public
      readCzi is an R package to read Carl Zeiss Image (CZI) files, convert them to tifs and store metadata
      R
      GNU General Public License v3.0
      1410Updated Mar 25, 2024Mar 25, 2024
    • OSS-DBS

      Public archive
      Open-Source Simulation platform for Deep Brain Stimulation
      Python
      GNU General Public License v3.0
      51743Updated Nov 28, 2023Nov 28, 2023
    • Supporting information for publication on short-term stimulation of MG-63 cells
      R
      GNU General Public License v3.0
      0100Updated Feb 21, 2023Feb 21, 2023
    • STELLA

      Public
      C
      GNU General Public License v3.0
      0010Updated Feb 17, 2023Feb 17, 2023
    • WebProv

      Public
      Online Provenance Tool for Simulation Models
      Vue
      GNU General Public License v3.0
      431016Updated Nov 13, 2022Nov 13, 2022
    • This is a collection of Dockerfiles used in the CRC ELAINE
      Dockerfile
      0000Updated Nov 2, 2022Nov 2, 2022
    • RO-Crate bundles from Calcium Imaging experiments including research data and their retrospective provenance
      HTML
      Creative Commons Attribution 4.0 International
      1200Updated Mar 8, 2022Mar 8, 2022
    • Prototype translating ELN protocols into RO-Crate bundles including the research data and a retrospective provenance representation
      Python
      Creative Commons Attribution 4.0 International
      1000Updated Mar 8, 2022Mar 8, 2022
    • Supporting information for publication by Budde et al. (2021)
      R
      GNU General Public License v3.0
      0000Updated Aug 11, 2021Aug 11, 2021
    • Supporting information for publication on short-term stimulation of neural progenitor cells
      R
      GNU General Public License v3.0
      0100Updated Aug 4, 2021Aug 4, 2021
    • Models, generated experiments, and data for the neurostimulator case study of the paper "Making Simulation Experiments Explicit and Accessible using Experiment Schemas"
      Python
      0000Updated Apr 13, 2021Apr 13, 2021
    • Models, generated experiments, and data for the endocytosis case study of the paper "Making Simulation Experiments Explicit and Accessible using Experiment Schemas""
      R
      0100Updated Apr 13, 2021Apr 13, 2021
    • elabftw

      Public
      📓 Lab manager, experiment notebook, database for research labs
      PHP
      GNU Affero General Public License v3.0
      220000Updated Mar 10, 2021Mar 10, 2021
    • elabapy

      Public
      Python package to interact with eLabFTW's API
      Python
      GNU General Public License v3.0
      10000Updated Mar 3, 2021Mar 3, 2021
    • ckan

      Public
      CKAN is an open-source DMS (data management system) for powering data hubs and data portals. CKAN makes it easy to publish, share and use data. It powers datahub.io, catalog.data.gov and europeandataportal.eu/data/en/dataset among many other sites.
      Python
      Other
      2k000Updated Feb 5, 2021Feb 5, 2021
    • Supporting information for paper by Staehlke et al. 2020
      R
      GNU General Public License v3.0
      0000Updated Dec 22, 2020Dec 22, 2020
    • This repository contains the semantic model of an Electronic Lab Notebook (ELN) protocols of a Calcium Imaging study.
      Creative Commons Attribution 4.0 International
      1000Updated Oct 15, 2020Oct 15, 2020
    • Supporting information for paper by Haack, Budde, Uhrmacher (doi: 10.1242/jcs.243675).
      Scala
      GNU General Public License v3.0
      0100Updated Jul 22, 2020Jul 22, 2020
    • elabimg

      Public
      elabftw in a docker container
      HTML
      GNU Affero General Public License v3.0
      34000Updated May 8, 2020May 8, 2020
    • Plugin for ImageJ to count and measure cells
      Java
      GNU General Public License v3.0
      0000Updated Apr 20, 2020Apr 20, 2020
    • Python script for the manuscript_____Farooqi, A.R.; Bader, R.; van Rienen, U. Numerical Study on Electromechanics in Cartilage Tissue with Respect to Its Electrical Properties. Tissue Eng. Part B Rev. 2019, 25, 152–166. doi:10.1089/ten.teb.2018.0214.
      Python
      GNU General Public License v3.0
      1000Updated Mar 9, 2020Mar 9, 2020
    • Python script for the manuscript_____Farooqi, A.R.; Zimmermann, J.; Bader, R.; van Rienen, U. Numerical simulation of electro-active hydrogels for cartilage tissue engineering. Materials 2019, 12(18), 2913; https://doi.org/10.3390/ma12182913.
      Python
      GNU General Public License v3.0
      1000Updated Mar 9, 2020Mar 9, 2020
    • rdmo

      Public
      A tool to support the planning, implementation, and organization of research data management.
      Python
      Apache License 2.0
      49000Updated Feb 24, 2020Feb 24, 2020
    • R
      GNU General Public License v3.0
      0000Updated Feb 4, 2020Feb 4, 2020