From 335c8ac4b6320f94c0bb52450b8a243835d0d33e Mon Sep 17 00:00:00 2001 From: FriederikeHanssen Date: Thu, 25 Apr 2024 12:47:46 +0000 Subject: [PATCH 1/2] add new citation --- CHANGELOG.md | 1 + README.md | 2 +- nextflow.config | 2 +- 3 files changed, 3 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 5a9059578..3eefe40c7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,6 +13,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#1477](https://github.com/nf-core/sarek/pull/1477) - Back to dev - [#1482](https://github.com/nf-core/sarek/pull/1482) - Pin `nf-prov` plugin to `1.2.2` +- [#](https://github.com/nf-core/sarek/pull/) - Update citation for publication ### Fixed diff --git a/README.md b/README.md index fc283ba45..460f333b7 100644 --- a/README.md +++ b/README.md @@ -193,7 +193,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `# If you use `nf-core/sarek` for your analysis, please cite the `Sarek` article as follows: -> Friederike Hanssen, Maxime U Garcia, Lasse Folkersen, Anders Sune Pedersen, Francesco Lescai, Susanne Jodoin, Edmund Miller, Oskar Wacker, Nicholas Smith, nf-core community, Gisela Gabernet, Sven Nahnsen **Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant discovery** _bioRxiv_ [doi: 10.1101/2023.07.19.549462](https://doi.org/10.1101/2023.07.19.549462). +> Friederike Hanssen, Maxime U Garcia, Lasse Folkersen, Anders Sune Pedersen, Francesco Lescai, Susanne Jodoin, Edmund Miller, Oskar Wacker, Nicholas Smith, nf-core community, Gisela Gabernet, Sven Nahnsen **Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant discovery** _ NAR Genomics and Bioinformatics_ Volume 6, Issue 2, June 2024, lqae031, [doi: 10.1093/nargab/lqae031](https://doi.org/10.1093/nargab/lqae031). > Garcia M, Juhos S, Larsson M et al. **Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants [version 2; peer review: 2 approved]** _F1000Research_ 2020, 9:63 [doi: 10.12688/f1000research.16665.2](http://dx.doi.org/10.12688/f1000research.16665.2). diff --git a/nextflow.config b/nextflow.config index f5eb354c9..e32da2cb9 100644 --- a/nextflow.config +++ b/nextflow.config @@ -391,7 +391,7 @@ manifest { mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' version = '3.5.0dev' - doi = '10.12688/f1000research.16665.2, 10.1101/2023.07.19.549462, 10.5281/zenodo.3476425' + doi = '10.12688/f1000research.16665.2, 10.1093/nargab/lqae031, 10.5281/zenodo.3476425' } // Load modules.config for DSL2 module specific options From dd0809e64dfaebb77f5af61e39398153de92caa5 Mon Sep 17 00:00:00 2001 From: Friederike Hanssen Date: Thu, 25 Apr 2024 14:48:51 +0200 Subject: [PATCH 2/2] Update CHANGELOG.md --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 3eefe40c7..c9cd99515 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,7 +13,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#1477](https://github.com/nf-core/sarek/pull/1477) - Back to dev - [#1482](https://github.com/nf-core/sarek/pull/1482) - Pin `nf-prov` plugin to `1.2.2` -- [#](https://github.com/nf-core/sarek/pull/) - Update citation for publication +- [#1485](https://github.com/nf-core/sarek/pull/1485) - Update citation for publication ### Fixed