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The target server failed to respond #1718

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torres-HI opened this issue Oct 30, 2024 · 1 comment
Open

The target server failed to respond #1718

torres-HI opened this issue Oct 30, 2024 · 1 comment
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bug Something isn't working

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@torres-HI
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Description of the bug

Hi there

Thank you for the pipeline, it was working good using just frebayes. now add sarek and mutec.
I need to find structural mutations, and de novo mutation, however still missing the parent to do all the process.

the pipeline was working fine, but today I have this error:

ERROR ~ Error executing process > 'NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_ENSEMBLVEP:ENSEMBLVEP_VEP (1)'
Caused by:
The target server failed to respond

someone, know what is about???

2.- someone know how iI can filter all the SNV reported, and just keep the one that are in the samples???

thank you

Command used and terminal output

N E X T F L O W ~ version 24.04.4
nf-core/sarek v3.4.4-g5cc3049

Core Nextflow options
revision : 3.4.4
runName : boring_lavoisier
containerEngine : singularity

Relevant files

No response

System information

HPC,
serum
Singularity

@torres-HI torres-HI added the bug Something isn't working label Oct 30, 2024
@torres-HI
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sorry is not mutec, I add manta

thank you

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