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Thank you for the pipeline, it was working good using just frebayes. now add sarek and mutec.
I need to find structural mutations, and de novo mutation, however still missing the parent to do all the process.
the pipeline was working fine, but today I have this error:
ERROR ~ Error executing process > 'NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_ENSEMBLVEP:ENSEMBLVEP_VEP (1)'
Caused by:
The target server failed to respond
someone, know what is about???
2.- someone know how iI can filter all the SNV reported, and just keep the one that are in the samples???
thank you
Command used and terminal output
N E X T F L O W ~ version 24.04.4
nf-core/sarek v3.4.4-g5cc3049
Description of the bug
Hi there
Thank you for the pipeline, it was working good using just frebayes. now add sarek and mutec.
I need to find structural mutations, and de novo mutation, however still missing the parent to do all the process.
the pipeline was working fine, but today I have this error:
ERROR ~ Error executing process > 'NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_ENSEMBLVEP:ENSEMBLVEP_VEP (1)'
Caused by:
The target server failed to respond
someone, know what is about???
2.- someone know how iI can filter all the SNV reported, and just keep the one that are in the samples???
thank you
Command used and terminal output
N E X T F L O W ~ version 24.04.4
nf-core/sarek v3.4.4-g5cc3049
Core Nextflow options
revision : 3.4.4
runName : boring_lavoisier
containerEngine : singularity
Relevant files
No response
System information
HPC,
serum
Singularity
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