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Figure out if Sarek-dev works with Spark #1406

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asp8200 opened this issue Feb 14, 2024 · 3 comments
Closed

Figure out if Sarek-dev works with Spark #1406

asp8200 opened this issue Feb 14, 2024 · 3 comments
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@asp8200
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asp8200 commented Feb 14, 2024

Description of the bug

Spark may have stopped working after docker.userEmulation was removed in #1405.

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@asp8200 asp8200 added the bug Something isn't working label Feb 14, 2024
@FriederikeHanssen
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Didn't you test it on your side and it worked fine?

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asp8200 commented Feb 15, 2024

I just ran nextflow run main.nf -profile test_cache,use_gatk_spark,docker --outdir foo

@asp8200 asp8200 mentioned this issue Mar 1, 2024
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@kenibrewer kenibrewer mentioned this issue Mar 7, 2024
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asp8200 commented Jun 14, 2024

I think this was solved. Otherwise reopen.

@asp8200 asp8200 closed this as completed Jun 14, 2024
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@FriederikeHanssen @asp8200