From 63eaf84e204bd9205432b96fc904388982299917 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Fri, 8 Sep 2023 12:09:16 +0200 Subject: [PATCH] remove singularity for GHA tests --- .github/workflows/ci.yml | 10 ++-------- CHANGELOG.md | 1 + 2 files changed, 3 insertions(+), 8 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index b00504ce7..361fca04f 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -39,19 +39,13 @@ jobs: fail-fast: false matrix: tags: ["${{ fromJson(needs.changes.outputs.tags) }}"] - profile: ["docker", "singularity"] + profile: ["docker"] + # profile: ["docker", "singularity", "conda"] TEST_DATA_BASE: - "test-datasets/data" NXF_VER: - "23.04.0" - "latest-everything" - exclude: - - profile: "singularity" - tags: concatenate_vcfs - - profile: "singularity" - tags: merge - - profile: "singularity" - tags: validation_checks env: NXF_ANSI_LOG: false TEST_DATA_BASE: "${{ github.workspace }}/test-datasets" diff --git a/CHANGELOG.md b/CHANGELOG.md index 59210b254..ef9fabd9a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -35,6 +35,7 @@ Rapaselet is a delta formed by the Rapaätno river between the Bielloriehppe mas - [#1198](https://github.com/nf-core/sarek/pull/1198) - Prepare release `3.3.0` - [#1200](https://github.com/nf-core/sarek/pull/1200) - Streamline Github Actions workflows - [#1212](https://github.com/nf-core/sarek/pull/1212) - Use matrix for AWS megatests +- [#1218](https://github.com/nf-core/sarek/pull/1218) - Remove Singularity tests for GHA ### Fixed