diff --git a/modules/nf-core/ltrharvest/tests/main.nf.test b/modules/nf-core/ltrharvest/tests/main.nf.test
index a8dbdb4c692a..e82909dfa27c 100644
--- a/modules/nf-core/ltrharvest/tests/main.nf.test
+++ b/modules/nf-core/ltrharvest/tests/main.nf.test
@@ -48,7 +48,9 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(process.out.gff3).match("gff3_no_ltr") },
+                { assert path(process.out.scn[0][1]).text.contains("predictions are reported in the following way") },
+                { assert snapshot(path(process.out.versions[0]).text).match("versions_no_ltr") }
             )
         }
 
diff --git a/modules/nf-core/ltrharvest/tests/main.nf.test.snap b/modules/nf-core/ltrharvest/tests/main.nf.test.snap
index 9da367215df0..cee4fecb00a8 100644
--- a/modules/nf-core/ltrharvest/tests/main.nf.test.snap
+++ b/modules/nf-core/ltrharvest/tests/main.nf.test.snap
@@ -1,53 +1,4 @@
 {
-    "sarscov2-genome_fasta-no_ltr": {
-        "content": [
-            {
-                "0": [
-                    [
-                        {
-                            "id": "test"
-                        },
-                        "test.gff3:md5,bddeb04277af08b5850e64708e8af02a"
-                    ]
-                ],
-                "1": [
-                    [
-                        {
-                            "id": "test"
-                        },
-                        "test.scn:md5,052ad9f59f8780d4fc42a389f1a7cd3e"
-                    ]
-                ],
-                "2": [
-                    "versions.yml:md5,51e82185b713482d1d48b6f15abe7fcc"
-                ],
-                "gff3": [
-                    [
-                        {
-                            "id": "test"
-                        },
-                        "test.gff3:md5,bddeb04277af08b5850e64708e8af02a"
-                    ]
-                ],
-                "scn": [
-                    [
-                        {
-                            "id": "test"
-                        },
-                        "test.scn:md5,052ad9f59f8780d4fc42a389f1a7cd3e"
-                    ]
-                ],
-                "versions": [
-                    "versions.yml:md5,51e82185b713482d1d48b6f15abe7fcc"
-                ]
-            }
-        ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "24.04.2"
-        },
-        "timestamp": "2024-07-16T12:49:31.454766"
-    },
     "versions": {
         "content": [
             "\"LTRHARVEST\":\n    LTR_HARVEST_parallel: v1.1\n    genometools: 1.6.5\n"
@@ -107,6 +58,23 @@
         },
         "timestamp": "2024-02-22T14:44:30.682167"
     },
+    "gff3_no_ltr": {
+        "content": [
+            [
+                [
+                    {
+                        "id": "test"
+                    },
+                    "test.gff3:md5,bddeb04277af08b5850e64708e8af02a"
+                ]
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.3"
+        },
+        "timestamp": "2024-07-16T15:19:51.163554"
+    },
     "gff3": {
         "content": [
             [
@@ -123,5 +91,15 @@
             "nextflow": "23.10.1"
         },
         "timestamp": "2024-02-22T19:29:33.962761"
+    },
+    "versions_no_ltr": {
+        "content": [
+            "\"LTRHARVEST\":\n    LTR_HARVEST_parallel: v1.1\n    genometools: 1.6.5\n"
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.3"
+        },
+        "timestamp": "2024-07-16T15:19:51.177662"
     }
 }
\ No newline at end of file