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Releases: nextflow-io/nextflow

Version 0.5.1

24 Oct 15:01
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  • Major executors refactoring
  • Featuring new single-thread tasks scheduler
  • New enhanced DLS syntax with extended semantic
  • Switched file handling to new NIO.2 file system
  • Introducing support for DNAnexus cloud platform
  • Removed unnecessary library dependencies
  • Slim self-contained executable package

Version 0.3.4

24 Aug 08:56
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  • Extending semantic for method File.copyTo(source,target) so that when 'target' argument
    is a directory, it copies the 'source' file to that folder, with the same name as the original file.
  • Bug: Fixed a ClassCastEx exception when the 'bin' folder is added to the PATH
  • Bug: Fixed an issue that raised an error "error=26 Text file busy" on some platforms (CentOS)

Version 0.3.3

11 Aug 14:37
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  • Added optional parameters to 'chunkLines' and 'chunkFasta' methods
  • Added '-lib' command line parameter specify external libraries (.jar files) or extension scripts
  • Folder 'lib' in the launch directory is added by as default libraries path
  • Added 'tempFile()' and 'tempDir()' methods to BaseScript class
  • The 'bin' directory in the script folder is added to the task PATH environment by default
  • Upgraded to Groovy 2.1.6
  • Upgraded to Slf4j 1.7.5
  • Upgraded to Logback 1.0.13

Version 0.3.2

22 Jul 13:09
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  • New command line option '-log' to specify the application log file
  • New command line options '-task.xxx' to task default parameters (overriding the ones in the configuration file)
  • Fixed a bug which was preventing the caching mechanism to work properly
  • Fixed synchronization issue caused by a miss-used CountDownLatch, replaced with a Phaser
  • Fixed a bug by which cached tasks didn't print out any result when 'echo' was set
  • Fixed a bug in the timezone handling in the build timestamp

Version 0.3.1

18 Jul 17:28
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  • Added command line parameter 'echo' to enable default tasks output
  • Fixed an issue on merge task, when it doesn't collect any data the execution is skipped

Version 0.3.0

11 Jul 15:54
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11 Jul 2013

  • Decoupled the processors logic by the execution strategy implementation
  • Normalised script level arguments so that a blank char may be used in place of the equals char
  • Added a new configuration option named 'clusterOptions' where specify grid native configuration parameters
  • Added a new configuration option named 'scratch' which enable/disable usage of scratch temporary folder when using cluster executors
  • Enhanced implementation of LSF executor