From f97b599c1c03d99c08b31d54bf7eb4f521976865 Mon Sep 17 00:00:00 2001
From: katiermullen <102704401+katiermullen@users.noreply.github.com>
Date: Fri, 28 Jun 2024 09:00:02 -0600
Subject: [PATCH 1/2] update taxa to mondo requirements

---
 src/ncbi_gene/transform.yaml | 145 +++++++++++++++++++++--------------
 1 file changed, 87 insertions(+), 58 deletions(-)

diff --git a/src/ncbi_gene/transform.yaml b/src/ncbi_gene/transform.yaml
index d328038..2352281 100644
--- a/src/ncbi_gene/transform.yaml
+++ b/src/ncbi_gene/transform.yaml
@@ -49,105 +49,134 @@ filters:
     column: "tax_id"
     filter_code: "in"
     value:
-      - "10029"
       - "10036"
+      - "10042"
       - "10047"
-      - "10090"
       - "10141"
-      - "10160"
-      - "122765"
+      - "103584"
+      - "118797"
+      - "120794"
+      - "13146"
       - "151761"
-      - "1549675"
-      - "156757"
-      - "169418"
-      - "222416"
-      - "227321"
-      - "244585"
-      - "27717"
-      - "29064"
-      - "30458"
+      - "1772025"
+      - "198806"
+      - "215402"
+      - "232645"
+      - "232655"
+      - "255217"
+      - "27706"
+      - "30521"
+      - "30532"
       - "30538"
-      - "32443"
+      - "30640"
+      - "31033"
+      - "31143"
       - "32536"
-      - "328804"
-      - "34839"
-      - "34880"
-      - "34882"
-      - "37347"
-      - "38626"
-      - "40674"
+      - "328808"
+      - "338458"
+      - "345164"
+      - "34892"
+      - "37190"
+      - "37349"
+      - "38666"
+      - "399537"
+      - "42413"
+      - "43597"
+      - "447135"
       - "452646"
-      - "47665"
-      - "48167"
+      - "46218"
+      - "46844"
+      - "476259"
+      - "48883"
       - "494514"
-      - "54133"
-      - "54180"
-      - "54181"
-      - "56268"
-      - "59523"
-      - "59729"
-      - "60468"
+      - "495946"
+      - "499056"
+      - "51751"
+      - "54059"
+      - "57661"
+      - "57662"
       - "61379"
-      - "64680"
-      - "69297"
-      - "77151"
+      - "61386"
+      - "61402"
+      - "61406"
+      - "61455"
+      - "68352"
+      - "69293"
+      - "70340"
+      - "7091"
+      - "74535"
+      - "749191"
+      - "74940"
+      - "7950"
+      - "7957"
+      - "7959"
+      - "7962"
       - "7994"
-      - "8015"
+      - "8030"
+      - "8090"
       - "8128"
-      - "8782"
+      - "8153"
+      - "8409"
+      - "8410"
+      - "87177"
       - "8790"
-      - "8835"
       - "8839"
       - "8843"
+      - "8845"
       - "8932"
       - "89462"
+      - "8966"
+      - "8996"
       - "9031"
       - "9103"
-      - "91561"
-      - "9226"
-      - "9322"
-      - "9363"
+      - "9135"
+      - "9217"
+      - "9228"
       - "93934"
-      - "9397"
+      - "9447"
       - "9483"
-      - "9518"
+      - "94885"
+      - "9515"
       - "9541"
+      - "9542"
       - "9544"
+      - "9557"
+      - "9579"
+      - "9580"
+      - "9590"
+      - "9593"
       - "9598"
+      - "9601"
       - "9612"
+      - "9614"
       - "9615"
       - "9627"
       - "9643"
-      - "9649"
-      - "9651"
+      - "9646"
       - "9669"
-      - "9681"
-      - "9682"
       - "9685"
       - "9689"
+      - "9690"
+      - "9691"
       - "9694"
-      - "9695"
-      - "9696"
-      - "9733"
       - "9739"
+      - "9749"
+      - "9767"
+      - "9773"
       - "9783"
-      - "9788"
-      - "9791"
       - "9793"
       - "9796"
-      - "9807"
       - "9823"
       - "9838"
-      - "9840"
       - "9844"
-      - "9845"
-      - "9850"
       - "9858"
-      - "9861"
+      - "9860"
       - "9863"
-      - "9895"
+      - "9870"
+      - "9897"
+      - "9901"
       - "9913"
+      - "9915"
       - "9925"
       - "9940"
-      - "9946"
       - "9986"

From 6be283d478f7542504c466486935e4ad85dc2c5a Mon Sep 17 00:00:00 2001
From: Nico Matentzoglu <nicolas.matentzoglu@gmail.com>
Date: Fri, 28 Jun 2024 18:47:46 +0300
Subject: [PATCH 2/2] Add 227321 to updated list

cc @glass-ships cause @katiermullen and I dropped that one again..
---
 src/ncbi_gene/transform.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/src/ncbi_gene/transform.yaml b/src/ncbi_gene/transform.yaml
index 2352281..52ca199 100644
--- a/src/ncbi_gene/transform.yaml
+++ b/src/ncbi_gene/transform.yaml
@@ -61,6 +61,7 @@ filters:
       - "1772025"
       - "198806"
       - "215402"
+      - "227321"
       - "232645"
       - "232655"
       - "255217"