README.md

boost-constructor

you will need node and npm

npm install

Usage

Server (e.g. with Genetic Constructor)

router.js is an express router which can be trivially mounted into an express app.

Pass credentials either as environment variables to the node app, or as headers with each request:

fetch('http://localhost:3001/verify', {
  method: 'POST',
  headers: {
    'Content-Type': 'application/json',
    'boost-username': ___,
    'boost-password': ___
  },
  body: {
    sequences: ['ACGTACGATCGACTGACTGACTACGTAGCTCGTACGGATCGATCGATCGATCGATGCCGTACGATC']
  }
});

Standalone CLI

There are some examples you can run:

BOOST_USERNAME=__ BOOST_PASSWORD=___ node run example/reverseTranslate

BOOST_USERNAME=__ BOOST_PASSWORD=___ node run example/codonJuggle

BOOST_USERNAME=__ BOOST_PASSWORD=___ node run example/verify

and pass lengths of random sequences into it as numbers

BOOST_USERNAME=__ BOOST_PASSWORD=___ node run example/verify 300 809

Parameters

Organism

Possible organisms (up to date version here):

Arabidopsis thaliana Bacillus subtilis Escherichia coli Saccharomyces cerevisiae