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Figures and tables in the back / annex section ignored #737

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de-code opened this issue Apr 14, 2021 · 3 comments · May be fixed by #738
Open

Figures and tables in the back / annex section ignored #737

de-code opened this issue Apr 14, 2021 · 3 comments · May be fixed by #738

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@de-code
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de-code commented Apr 14, 2021

This is related to #698

Some documents have main figures and supplementary figures.
If in those cases, the segmentation model labels the supplementary figures as annex,
then the content is passed separately to the fulltext model.
If the fulltext then correctly labels it as figure, then the figures from the annex are not included in the output.
@de-code
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de-code commented Apr 14, 2021

This seems to be due to FullTextParser processing figures and tables from the body only.

This was referenced Apr 14, 2021
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@lfoppiano
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@de-code do you have a Pdf for testing?

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de-code commented Apr 16, 2021 •
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One example is DOI 10.1101/306803 or 306803v1 (from the bioRxiv 10k validation dataset).
It has "Extended Data Figure 1" etc.
I haven't tested whether they are going to get extracted well with the default models.

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added annex figures, tables, equations elifesciences/grobid
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@lfoppiano @de-code