diff --git a/lessons/SnpSift_exercise_KEY.md b/lessons/SnpSift_exercise_KEY.md index 1e4adb0..897a42e 100644 --- a/lessons/SnpSift_exercise_KEY.md +++ b/lessons/SnpSift_exercise_KEY.md @@ -29,7 +29,7 @@ java -jar $SNPEFF/SnpSift.jar filter "( CHROM = '11' ) & ( ( ANN[*].EFFECT has **4)** Extract all of the high impact mutations on Chromosome 12 or moderate impact mutations on Chromosome 3. ``` -java -jar $SNPEFF/SnpSift.jar filter "( ( CHROM = '12') & ( ANN[*].IMPACT has 'HIGH' ) ) | ( ( CHROM = '13') & ( ANN[*].IMPACT has 'MODERATE' ) )" mutect2_syn3_normal_syn3_tumor_GRCh38.p7-pass-filt-LCR.pedigree_header.snpeff.dbSNP.vcf +java -jar $SNPEFF/SnpSift.jar filter "( ( CHROM = '12') & ( ANN[*].IMPACT has 'HIGH' ) ) | ( ( CHROM = '3') & ( ANN[*].IMPACT has 'MODERATE' ) )" mutect2_syn3_normal_syn3_tumor_GRCh38.p7-pass-filt-LCR.pedigree_header.snpeff.dbSNP.vcf ``` [Next Lesson >>](11_IGV.md)