From efd6bcafe543c36b6cc626103a1170c120629e13 Mon Sep 17 00:00:00 2001
From: Gisela Gabernet <gisela.gabernet@gmail.com>
Date: Tue, 21 Nov 2023 09:25:02 -0500
Subject: [PATCH 1/2] rm optional true from filterquality

---
 modules/local/reveal/filter_quality.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/local/reveal/filter_quality.nf b/modules/local/reveal/filter_quality.nf
index a20d029e..abd71995 100644
--- a/modules/local/reveal/filter_quality.nf
+++ b/modules/local/reveal/filter_quality.nf
@@ -14,7 +14,7 @@ process FILTER_QUALITY {
     tuple val(meta), path(tab) // sequence tsv in AIRR format
 
     output:
-    tuple val(meta), path("*quality-pass.tsv"), optional:true, emit: tab // sequence tsv in AIRR format
+    tuple val(meta), path("*quality-pass.tsv"), emit: tab // sequence tsv in AIRR format
     path("*_command_log.txt"), emit: logs //process logs
     path "versions.yml", emit: versions
 

From 500a21ef8198115a25614ca21b98a6abeffd895f Mon Sep 17 00:00:00 2001
From: Gisela Gabernet <gisela.gabernet@gmail.com>
Date: Tue, 21 Nov 2023 09:27:47 -0500
Subject: [PATCH 2/2] bump versions 3.2.1dev

---
 CHANGELOG.md              | 10 ++++++++++
 assets/multiqc_config.yml |  2 +-
 nextflow.config           |  2 +-
 3 files changed, 12 insertions(+), 2 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 3484b265..755f0d29 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,6 +3,16 @@
 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
 
+## [3.2.1dev] -
+
+### `Added`
+
+### `Fixed`
+
+- Removed optional output from FilterQuality to not fail silently
+
+### `Dependencies`
+
 ## [3.2.0] - 2023-10-27 Expecto patronum
 
 ### `Added`
diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
index b54b1946..52ed38e2 100644
--- a/assets/multiqc_config.yml
+++ b/assets/multiqc_config.yml
@@ -1,5 +1,5 @@
 report_comment:
-  This report has been generated by the <a href="https://nf-co.re/airrflow/3.2.0" target="_blank">nf-core/airrflow</a>
+  This report has been generated by the <a href="https://nf-co.re/airrflow/3.2.1dev" target="_blank">nf-core/airrflow</a>
   analysis pipeline. For information about how to interpret these results, please see the
   <a href="https://nf-co.re/airrflow" target="_blank">documentation</a>.
 
diff --git a/nextflow.config b/nextflow.config
index 1b772655..9fcbed9d 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -329,7 +329,7 @@ manifest {
     description     = """B and T cell repertoire analysis pipeline with the Immcantation framework."""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version = '3.2.0'
+    version = '3.2.1dev'
     doi             = '10.5281/zenodo.2642009'
 }