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slurmfun

MATLAB tools for submitting jobs into SLURM

This repository provides tools for submitting MATLAB jobs into the SLURM (Simple Linux Utility for Resource Management) scheduling system. The MATLAB function slurmfun can be used similar to the MATLAB function cellfun, i.e. it will apply a user-defined function to all elements of a cell array and return a cell array of output arguments. Each function all will be submitted as a separate job into the schedulder. See also help slurmfun for details.

Cluster Environment

So far, slurmfun has only been used in the cluster environment of the Ernst Strungmann Institute for Neuroscience using

  • SLURM 17 and 20.02
  • MATLAB 2014a until 2020ab
  • Debian 8 and RHEL 8.1

The default paths for log files and the SLURM working directory ('slurmWorkingDirectory', availableToolboxes in slurmfun.m), will have to be adjusted for the specific cluster environment.