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extract: Outputs blank lines #48

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sjackman opened this issue Jan 14, 2019 · 1 comment
Open

extract: Outputs blank lines #48

sjackman opened this issue Jan 14, 2019 · 1 comment

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@sjackman
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sjackman commented Jan 14, 2019

gfak extract outputs blank lines. For example:

>7
CTCTTTTTTATTATAATGAAATTTGATTAGTAATAATTCTATTTTATTGTATTAAAAAACAAACTAC

>8
GGGTTTATTTGATCAATTTTTGCAATCAATTTCTTGAAACCG

>9
AGTATTGAATAAATACTATTTTGAATTAAAGAA

There are typically no blank lines in a FASTA file.

@edawson
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edawson commented Jan 21, 2019

This is fixed in the latest release but hasn't made it to homebrew quite yet. I'll close once it's resolved globally!

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